Exiguobacterium aurantiacum: NMQ00_12245
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Entry
NMQ00_12245 CDS
T08404
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
eaur
Exiguobacterium aurantiacum
Brite
KEGG Orthology (KO) [BR:
eaur00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
eaur03016
]
NMQ00_12245
Enzymes [BR:
eaur01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
NMQ00_12245
Transfer RNA biogenesis [BR:
eaur03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
NMQ00_12245
Prokaryotic type
tRNA splicing ligases
NMQ00_12245
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF2002
Motif
Other DBs
NCBI-ProteinID:
UTT42302
UniProt:
A0ABY5FM20
LinkDB
All DBs
Position
complement(2364893..2366071)
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AA seq
392 aa
AA seq
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MEIIGKHNRAKVFNERIDDMTRAQIQTLVDQPFTAGASIRIMPDMHAGKGSVVGTTMTIH
DKVVPNLVGVDLGCGMLCTEIKAKRIDFQRLDDVIHQYVPSGMNIRDAAHPYASELPLED
VRAPYKLDRALRSVGTLGSGNHFIEVNRDEAGRTFLVIHSGSRHLGVQIADHYQQLAVEH
MMKTVDIRDEIERMKATGRQQDISAYLETEREARKRFRDLAYVEGEAMGDYMHDVRIAQQ
YAAANRLAMTDVIVEAMSWNVVDQFDTVHNYIDHDAMILRKGAISARDGERVIIPMNMRD
GSLICTGKGNPDWNFSGPHGAGRVMSRSAARKRVDFNEFKKSMVGVWSSSVRPSTVDESP
FVYKSMKEIVRYIEPAVTIDQVIKPLYNFKAN
NT seq
1179 nt
NT seq
+upstream
nt +downstream
nt
atggagattatcggaaagcataaccgggccaaagtgttcaatgaacggattgacgatatg
acgcgggcccaaatccaaacactcgttgaccaaccgttcacagcgggtgcctcgattcga
attatgccggacatgcatgccggcaaaggctcggtcgtcgggacgacgatgacgattcac
gacaaggtcgtgccgaaccttgtcggggtcgacctcgggtgcggcatgctctgcacggag
atcaaagcgaaacgaatcgactttcaacggctcgacgacgtcatccatcaatacgtaccg
agcgggatgaatatccgggatgcggcacacccgtatgcctccgagctcccgctcgaggac
gtgcgggcgccgtataaactggaccgggccctccgctcggtcggcacgctcggctcgggc
aatcacttcatcgaagtgaaccgcgacgaagccggacgcacgtttctcgtcatccactcc
ggctcacgccacctcggtgtccaaatcgccgaccattatcaacagttggcggtcgagcac
atgatgaaaacggtcgacattcgagacgagattgaacggatgaaggcaacggggcggcag
caggacatctcggcctatctcgagacggagcgcgaggcacggaaacgtttccgcgacctc
gcctacgtcgaaggggaagcgatgggagattatatgcacgacgtgcgtatcgcacagcaa
tatgcggccgccaaccgtcttgccatgaccgatgtcatcgtcgaggcgatgagctggaac
gtcgttgaccaattcgatacggtccacaattatatcgaccacgacgcgatgatccttcgg
aaaggggccatctcggcgcgtgacggggagcgggtcatcattccgatgaacatgcgcgac
ggctcgctcatctgtaccggcaagggcaacccggactggaacttctcgggaccacacggc
gcgggacgggtcatgtcacgctcggccgcgcgaaaacgcgtcgacttcaacgaatttaaa
aagtcgatggtaggtgtctggtcgagttcggtccgaccgtcgacggttgacgagtcaccg
ttcgtctataagtcgatgaaagaaatcgtccgttatatcgagccggccgtcaccatcgat
caagtcatcaaaccgctctacaacttcaaggcgaactga
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