Exiguobacterium aurantiacum: NMQ00_12420
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Entry
NMQ00_12420 CDS
T08404
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
eaur
Exiguobacterium aurantiacum
Pathway
eaur03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eaur00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NMQ00_12420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eaur03019
]
NMQ00_12420
03009 Ribosome biogenesis [BR:
eaur03009
]
NMQ00_12420
Enzymes [BR:
eaur01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NMQ00_12420
Messenger RNA biogenesis [BR:
eaur03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NMQ00_12420
Ribosome biogenesis [BR:
eaur03009
]
Prokaryotic type
rRNA helicases
NMQ00_12420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_RecD
GRP
CMS1
Flavi_DEAD
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
UTT42336
LinkDB
All DBs
Position
complement(2400578..2402086)
Genome browser
AA seq
502 aa
AA seq
DB search
MTKFQDLQLSEVLVKGVLKMGFEEATPIQAETIPVALTGVDVLGQAQTGTGKTAAFGIPT
IERIDTKARQVQALVLAPTRELAIQVAEELNKIGEAKRVYALPVYGGQQIDRQIRGLKKN
PQIVVATPGRLMDHMKRKTIKLDEIQTVILDEADEMLNMGFVEDIEMILKGLPAERQTLL
FSATMPPQIKKIAERFMKSPTIIKVKAKEMTVENINQQFLELREGQKFDTLCRLIDIDSP
ELSIIFARTKKRVDEVTEALIKRGYTADGLHGDLTQSKRDQVIRRFKNSTIDILVATDVA
ARGLDITGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGTALTFITPREFGQVKAIERVTN
KKMNRRHVPTISEVLEGNQKQSAEELIERVQAGDFKAYTQLATELLEEYEAVELLAAALR
GLTKEPDSTPVEISYAEPVRVKRQGGRNDRGGYRGNRSGGGERRGGGDRGGRSGGGGGYR
GKRTGGEDRRRSDDRGPRRPRD
NT seq
1509 nt
NT seq
+upstream
nt +downstream
nt
ttgacaaaattccaagatttacagttaagtgaagtattagtaaaaggtgtactcaaaatg
ggcttcgaagaagctacaccgatccaagctgagacaattcctgtcgcactcacaggagtg
gacgtattaggtcaagcacaaacaggtacagggaaaacagcagctttcggtattccgaca
attgagcgaatcgacacaaaggcacgtcaagtccaagcacttgttcttgcaccgacacgt
gaacttgcgattcaagttgcagaagaattgaacaaaattggtgaagcgaagcgcgtttac
gcacttccagtatacggtggtcaacaaatcgaccgccaaatccgtggtttgaaaaagaac
ccgcaaatcgtcgttgcgacaccaggacgtctcatggaccacatgaaacgcaagacgatc
aaactcgacgagatccaaacagtgatcttggacgaggcggatgaaatgctcaacatgggc
ttcgttgaagatatcgagatgattttgaaaggccttccggctgaacgtcaaacgcttctc
ttctctgcaacaatgccaccacaaatcaagaagattgctgagcgcttcatgaagtcgccg
acaatcatcaaagtcaaagcgaaggaaatgacagttgagaacatcaaccaacaattcctc
gaattgcgcgaaggccaaaaattcgatacgctttgccgtttgatcgacatcgattcgcca
gaactcagcatcatcttcgctcgtacgaagaaacgtgttgacgaagtgacagaagcactt
atcaaacgtggttacacggctgatggtcttcacggtgacttaacgcaatcaaaacgtgac
caagtcatccgtcgtttcaaaaacagcacgatcgacatcttggtcgcaacagacgtagcg
gcacgtggtcttgatatcacaggcgttacacacgtttacaactttgacgtcccacaagat
ccggaaagctacgtgcaccgtatcggacgtacaggccgtgctggtaaaacaggtacagct
cttacgttcatcacgccacgtgaattcggtcaagtcaaagcaatcgaacgcgtaacgaac
aagaagatgaaccgtcgtcacgttccgacaatctcagaagtgctcgagggcaaccaaaag
caatcggctgaagaattgatcgaacgtgtacaagcgggcgacttcaaggcttacacgcaa
cttgcgactgagcttcttgaagaatacgaagcagtcgagcttcttgcagcggcacttcgt
ggattgacgaaagagccagattcaactccggttgaaatctcgtatgcagaaccagttcgc
gtcaaacgtcaaggtggacgcaacgaccgtggtggataccgtggaaatcgcagtggcggc
ggcgaacgtcgtggcggcggtgaccgtggtggacgcagcggtggcggcggtggataccgt
ggcaaacgcacgggtggagaagaccgtcgtcgttcagacgaccgtggcccacgccgtccg
cgtgactaa
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