Ensifer aridi: ACEP9W_01130
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Entry
ACEP9W_01130 CDS
T10792
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
eaw Ensifer aridi
Pathway
eaw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eaw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACEP9W_01130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eaw03019
]
ACEP9W_01130
Enzymes [BR:
eaw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ACEP9W_01130
Messenger RNA biogenesis [BR:
eaw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ACEP9W_01130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_RecD
AAA_22
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
XFE86320
LinkDB
All DBs
Position
complement(206625..208127)
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AA seq
500 aa
AA seq
DB search
MSNFKALGLSEQILATLSVNGFEKPTPIQAQAIPLVLKGHDLIGLAQTGTGKTAAFGLPM
IEKLVADGKRPDPRNIRALVLAPTRELVNQIAANLRLFVHKTPLKVGIVVGGVSINKQTE
QLARGVDILVATPGRLLDLVARKAVTLTQGRYLVLDEADQMLDLGFIHDLRKISKLVPKN
RQTLLFSATMPKLIAELAGEYLTDPVKVEVTPPGKAADKVEQYIHFVPGKDLKTTILKQS
LTANPDGLSLVFSRTKHGAEKLMKHLDQVGFKAASIHGNKSQGQRERALKAFRDGDIRVL
VATDVAARGIDIPGVTHVYNYDLPEVPDAYVHRIGRTARNGRDGIAIAFCSPDEIRLLRD
IEKLMGIKIAVASGEAPADQARPSKGRGGRGNGQHRGNGGQRQDGGQRGKRPARESAVTG
GFAGDELLRDDRPHERRDHRSTGHGHHDGRAEGNRNHENRTHHGRPGAKHGDPRRSAGEP
GNRREGGQGTRRTEKRGRQG
NT seq
1503 nt
NT seq
+upstream
nt +downstream
nt
ttgtccaattttaaggcgctcggcctctccgagcagatccttgcgaccctctccgtcaat
ggtttcgaaaagccgacgccgatccaggcgcaagccattccgctggtccttaagggccac
gaccttatcggccttgcccagacgggcacaggcaagacggcagctttcggcctgccgatg
atcgagaagctcgtcgctgacggcaagcgccccgatccacgcaacatccgcgccctcgtg
cttgcgccgacgcgtgaactcgtcaaccagatcgcggccaatcttaggctcttcgtgcac
aagaccccgctcaaggtcggcatcgtggtcggcggcgtctcgatcaacaagcagaccgag
caactcgcccgcggcgtcgacattctcgtcgccacgccgggccgcctgctcgacctcgtc
gcccgcaaggccgtgacgctgacccaagggcgctatctcgtcctcgacgaggccgaccag
atgctcgacctcggcttcatccatgatctccgcaagatctcgaagctcgtgccgaagaac
cgccagacgctgctcttctccgcaacgatgccgaagctgatcgccgagctcgcaggcgag
tacctgaccgatccggtcaaggtcgaggtcacgcctccgggcaaggccgccgacaaggtc
gaacaatatatccacttcgtccccggcaaggacctgaagacgacgatcctcaagcagtcg
ctgaccgcgaaccccgacggcctgtcgctggtcttcagccgcacgaagcacggcgccgag
aaacttatgaagcatctcgatcaggtgggcttcaaggccgcgtcgatccatggcaacaag
agccagggtcagcgcgagcgcgcgctgaaggcgttccgtgacggcgatatccgcgttctg
gtggcgaccgacgtcgccgcccgcggcatcgacattcccggcgtcacccatgtctataac
tatgacctgccggaagtgccggatgcctatgtccaccgcatcggccgcacggcgcgcaac
ggtcgggacggcattgcgatcgccttctgctcgccggatgaaatccggctgctccgcgac
atcgaaaagctcatgggcataaagatcgcggttgcaagcggtgaggcaccggctgaccag
gctcgtccatccaaaggccgcggcggtcgcggcaacggccagcatcgcggcaacggcggt
cagcgtcaggacggcggccagcgcggcaagcggccggcgcgcgaatcggcggtgaccggc
ggctttgccggcgacgagctgctgcgcgatgaccgcccgcacgagcgccgtgatcaccgt
tcgaccggccacggccaccacgacggccgggcggaaggcaaccgcaatcacgaaaaccgc
acgcatcacggccgtccgggagcgaagcatggcgacccgcgccgcagcgccggtgaaccc
ggaaaccgccgggaaggcggtcaggggacgcgccgcaccgaaaagcgcggccgccagggc
tga
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