Ensifer aridi: ACEP9W_07135
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Entry
ACEP9W_07135 CDS
T10792
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
eaw Ensifer aridi
Pathway
eaw03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
eaw00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ACEP9W_07135 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
eaw03021
]
ACEP9W_07135 (rpoC)
03400 DNA repair and recombination proteins [BR:
eaw03400
]
ACEP9W_07135 (rpoC)
Enzymes [BR:
eaw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ACEP9W_07135 (rpoC)
Transcription machinery [BR:
eaw03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ACEP9W_07135 (rpoC)
DNA repair and recombination proteins [BR:
eaw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ACEP9W_07135 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
BSH_YknX
RPOC_hybrid
BSH_RND
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
XFE87408
LinkDB
All DBs
Position
complement(1432272..1436477)
Genome browser
AA seq
1401 aa
AA seq
DB search
MNQEVMNLFNPQVPAQTFDSIRISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGIICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPSRIATLLDMTLKDIERVLYFENYIVTEPGLTSLKENQLLSEEEYMIAVDEFGEDQFTA
MIGAEAIYEMLASMNLEKIAGDLRAEMAETSSDLKQKKLMKRLKIVENFMESGNRPEWMI
MKVIPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPGIIIRNEKRM
LQESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTG
PELKLHQCGLPKKMALELFKPFIYARLDAKGYSSTVKQAKKLVEKEKPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPILVEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGAPIIVPSQDMVLGLYYLSIMNQNEPGEGMAFSDMGELHHALE
TKAVTLHAKIRGRYKTVDAEGNPVSKIYETTPGRMIIGELLPKNPNIPFDICNQEMTKKN
ISKMIDTVYRHCGQKDTVIFCDRIMQLGFSHACRAGISFGKDDMVIPDTKAKIVGDTEAL
VKEYEQQYNDGLITQGEKYNKVVDAWGKATEKVAEEMMARIKAVEFDDNGRQKPMNSIYM
MSHSGARGSPNQMRQLGGMRGLMAKPSGEIIETPIISNFKEGLTVNEYFNSTHGARKGLA
DTALKTANSGYLTRRLVDVAQDCIVTHTDCGTDKGLTMTAIVDAGQVVASLGQRILGRTA
LDNIDNPVTGERIVDAGKMILEADVALIEKAGIQSVRIRSALTCEIQTGVCGVCYGRDLA
RGTPVNMGEAVGVIAAQSIGEPGTQLTMRTFHLGGTATVVDQSFLEASYEGTVQIKNRNM
LRNSDGTLVAMGRNMAIQILDERGVERSSQRVAYGSKIFVDDGDKVKRGQRLAEWDPYTR
PMMTEVEGTVHFEDVIDGISVLESTDESTGITKRQVIDWRSTPRGTDLKPAIVIKDKNGS
IAKLARGGEARFMLSVDAILSVEPGQKVSQGDVLARSPLESAKTKDITGGLPRVAELFEA
RRPKDHAIIAEIDGTVRFGRDYKNKRRVMIEPAEDGVEPVEYLIPKGKPFHLQDGDYIEK
GDYILDGNPAPHDILAIKGVEALASYLVNEIQEVYRLQGVVINDKHIEVIVRQMLQKVEI
TDAGDSTYIVGDNVDRIELEDVNDALIAEGKKPAYGEPVLLGITKASLQTPSFISAASFQ
ETTKVLTEAAVAGKTDSLQGLKENVIVGRLIPAGTGGTMTQIRRIATARDELILEERRKG
TGAEAATPMLADMADDHAAAE
NT seq
4206 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaagaggtcatgaatcttttcaatccgcaggtgcctgcacagaccttcgactcc
atccggatttcgattgcgtcgccggagaagattctttcctggtcttacggtgagatcaag
aaaccggagacgatcaactaccgcactttcaagccggaacgcgacggtctgttctgcgcg
cgcatcttcggtccgatcaaggactacgagtgcctgtgcggcaagtacaagcgcatgaag
tacaagggcatcatctgcgaaaagtgcggcgtcgaagtcacgctgtcgcgcgttcgccgt
gagcgcatgggccatatcgagctcgccgcgcccgttgcccacatctggttcctgaagtcg
ctgccgagccgcatcgcgacgctactcgacatgactctcaaagatatcgagcgggttctc
tatttcgagaactacatcgtcacggagcctggcttgacgtcgctcaaggagaaccagctc
ctgagcgaagaagagtacatgatcgcggtcgatgaattcggtgaagaccagttcaccgcg
atgatcggcgccgaggcgatctacgaaatgctcgcttcgatgaatctcgaaaagatcgcc
ggcgatctgcgcgcggagatggccgagacgagctcggatctgaagcagaagaagctgatg
aagcggctgaagatcgtcgagaacttcatggagtccggcaaccgcccggaatggatgatc
atgaaggtcattccggtgatcccgccggacctgcgcccgctcgttccgctcgatggcggc
cgcttcgcgacgtcggacctcaacgatctctaccgtcgcgtgatcaaccgtaataaccgc
ctgaagcggctgatcgaactgcgcgcgccgggcatcatcatccgcaacgaaaagcgcatg
ctgcaggaatccgtggatgcgctgttcgataacggccgccgcggccgcgtcatcacgggc
gccaacaagcgtccgctgaagtcgctctctgacatgctgaagggcaagcagggccgcttc
cgccagaacctgctcggcaagcgcgtcgactattccggccgttcggtcattgtgaccggt
ccggaactgaagctccaccagtgcgggctgccgaagaagatggcgctcgagctcttcaag
ccgttcatctacgcccgcctcgacgctaagggctactcctcgacggtcaagcaggcgaag
aagctcgtcgagaaggaaaagccggaagtctgggatatcctcgacgaggtcatccgcgaa
catccggtgctcctcaaccgcgcgccgacgctgcatcgcctgggcatccaggccttcgag
ccgatcctggtcgaaggcaaggcgatccagctgcacccgctcgtctgcacggccttcaac
gccgacttcgacggcgaccagatggccgttcacgtgccgctgtcgctcgaagctcagctt
gaagcgcgcgtgctgatgatgtcgacgaacaacatcctgcatccggcaaacggtgcaccg
atcatcgtgccgtcgcaggacatggttctcggcctctattatctctcgatcatgaatcag
aacgagcctggcgaaggcatggccttctccgacatgggcgaactgcaccatgcgctggag
acgaaggccgtcaccctgcacgccaagatccgcggccgttacaagaccgtcgacgccgag
ggcaacccggtttcgaagatctatgaaacgacgccaggtcgcatgatcatcggcgaactc
ctgccgaagaacccgaacattccgttcgatatctgcaaccaggagatgaccaagaagaac
atctcgaagatgatcgacacggtctaccgccattgcggccagaaggacacggtcatcttc
tgcgaccggatcatgcaactcggcttctcgcatgcctgccgcgccggcatttcgttcggg
aaggacgacatggtgattccggacaccaaggcgaagatcgtcggcgatacggaagcgctc
gtgaaggaatacgagcagcagtacaatgacggtctcatcacccagggcgagaagtacaac
aaggtcgtcgacgcttggggcaaggcaaccgagaaggtcgccgaagagatgatggcgcgc
atcaaggcagtcgagttcgacgataacggtcgccaaaagccgatgaactcgatctacatg
atgtcgcactcgggtgcgcgtggttcgccgaaccagatgcgtcagctcggtggcatgcgt
ggcctgatggccaagccgtcgggtgaaatcatcgagacgccgatcatctcgaacttcaag
gaaggcctgaccgtgaacgagtacttcaactcgacccacggtgcccgtaagggtctcgcc
gacaccgccttgaagacggcgaactcgggctacctgacgcgtcgtctcgtcgacgtcgcg
caggactgcatcgtcacgcataccgattgcggtaccgacaagggcctcaccatgacggcg
atcgtcgatgccggtcaggtcgttgcctcgctcggccagcgtatcctcggccgtacggcg
ctcgacaacatcgacaacccggtcaccggcgagcgcatcgtcgatgccggcaagatgatc
ctcgaagccgatgtcgcactcatcgaaaaggccggcattcagtccgtccgcatccgttcg
gcgctgacctgtgaaatccagacgggtgtttgcggtgtctgctacggtcgcgacctggcc
cgcggtacgccagtcaatatgggcgaggccgtcggcgtcatcgcggcacagtcgatcggc
gagccgggcacccagctcaccatgcgtaccttccacctcggcggtaccgcgaccgtggtc
gaccagtcgttcctggaagcctcctatgagggcacggttcagatcaagaaccgcaacatg
ctgcgcaattccgatggcacgcttgttgccatgggtcgcaacatggcgatccagatcctg
gacgagcgcggcgtggagcgttcctcgcagcgtgtggcctatggttcgaagatcttcgtc
gacgacggcgacaaggtgaagcgcggccagcgcctcgccgagtgggacccctacacccgt
ccgatgatgacggaagtggaaggcaccgttcacttcgaagacgtgatcgacggtatctcc
gttctcgaatcgacggacgagtcgaccggcatcaccaagcgccaggttatcgactggcgc
tcgacgccgcgcggcacggacttgaagcccgcgatcgtcatcaaggacaagaacggcagc
atcgcgaagcttgctcgcggtggcgaagcccgcttcatgctctcggtcgacgcgatcctc
tcggtcgaaccgggacagaaggtcagccagggtgacgttcttgcccgttcgccgctcgaa
agcgccaagaccaaggacatcaccggtggtctgccgcgcgttgccgagctgttcgaggct
cgtcgtccgaaggatcacgccatcatcgcggagatcgatggtacggttcgcttcggtcgc
gattacaagaacaagcgtcgcgtcatgatcgagccggcggaagacggtgtcgagccggtc
gagtacctgattccgaagggcaagcccttccatcttcaggacggcgactacatcgaaaag
ggcgactacatcctcgacggcaacccggcgccgcatgacatcctggcgatcaagggcgtg
gaagcgctggcttcctatctcgtcaacgagatccaggaagtctaccgtctgcagggcgtt
gtcatcaacgacaagcacatcgaggtcatcgtccggcagatgctgcagaaggtggagatc
accgacgccggtgactcgacctacatcgtcggagacaatgtcgaccgcatcgagctggag
gatgtcaacgacgcgctgatcgccgaaggcaagaagcccgcctatggcgagccggtcctg
ctcggcatcaccaaggcatcgctgcagacgccgtccttcatctcggccgcgtcgttccag
gagaccacgaaggtcctgaccgaggctgcagtcgccggcaagacggacagcctgcagggg
ttgaaggaaaacgtcatcgtcggtcgtctcatcccggccggtactggtggcacgatgacg
cagatccgccgtatcgccacagcgcgcgacgagctgatcctcgaagagcgtcgcaagggc
accggagcggaagcagccacgccgatgctcgccgacatggcggacgatcacgccgctgcg
gaataa
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