Enterobacter adelaidei: AAHF05_02080
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Entry
AAHF05_02080 CDS
T10740
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
eax Enterobacter adelaidei
Pathway
eax03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eax00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AAHF05_02080 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eax03019
]
AAHF05_02080 (rnr)
03016 Transfer RNA biogenesis [BR:
eax03016
]
AAHF05_02080 (rnr)
Enzymes [BR:
eax01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
AAHF05_02080 (rnr)
Messenger RNA biogenesis [BR:
eax03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AAHF05_02080 (rnr)
Transfer RNA biogenesis [BR:
eax03016
]
Prokaryotic type
tRNA degradation factors
AAHF05_02080 (rnr)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
Rho_RNA_bind
TFIIE_beta
Motif
Other DBs
NCBI-ProteinID:
XGV91862
LinkDB
All DBs
Position
424790..427231
Genome browser
AA seq
813 aa
AA seq
DB search
MSQDPFQEREAEKYANPIPSREFIIEHLTKREKPANREELAVELNIEGEEQIEALRRRLR
AMERDGQLVFTRRQCYALPERLDLLKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKMCIH
GDQILAQPLGADRKGRREARVVRVLVPKTSQIVGRYFTDAGVGFVVPDDSRLSFDILIPP
EEVMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDMALRTHEIPYIWPKA
VEEQIEGLREEVPEESKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA
DVSYYVRPHTPLDNEARNRGTSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTIS
TKGRLTGYKFYEAVMSSHARLTYTKVWHMLQGDQDLREQYAPLVKHIEELHNLYKTLDQA
REERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEP
ALFRIHDKPSTEAITAFRSVLAELGLELPGGNKPEPRDYAELLESIGDRPDAEMLQTMLL
RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLSLHRAIKYLLAQEQGHKGNTTETG
GYHYSMEEMLQLGQHCSMTERRADEATREVSDWLKCDFMLDQVGNVFKGVIASVTGFGFF
VRLDELFIDGLVHVSSLDNDYYRFDQVGQRLIGESGGQTYRLGDRVEVKVEAVNMDERKI
DFSLISSERGPRNVGKTAREKAKKGGNGNTSGKRRQAGKKVNFEPDSAFRGEKKKKPKAA
KKEARSAKKPSAKTQKIAAATKAKRAAKKKQAE
NT seq
2442 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaagatccattccaggaacgcgaagccgaaaaatacgcgaaccctatccccagc
cgcgagttcatcattgaacacttaacaaaacgcgaaaaacccgccaatcgtgaagaactt
gccgttgaattaaatattgaaggtgaagagcaaattgaagcccttcgccgtcgcctgcgc
gccatggagcgtgacgggcaactggtctttacccgccgtcagtgctatgcgctgccagaa
cgccttgatctgctgaaaggaaccgtcattggtcaccgtgacggctatggcttcctgcgc
gtagaaggtcgtaaagacgatctgtacctttcatctgaacagatgaaaatgtgtatccac
ggtgaccagatcctggcccagccgctgggcgctgaccgtaaaggtcgccgcgaagctcgc
gtggtgcgcgtgctggtgccaaaaaccagccagattgttggccgctactttaccgatgcg
ggcgtcggctttgtggtaccggacgacagccgtctgagttttgatatcctgatcccacct
gaagaggttatgggcgcgcgcatgggctttgtggtggtggttgagctcacccagcgtcct
acccgtcgcactaaagcggtcgggaaaatcgtggaagtattgggcgataacatgggcacc
ggcatggctgttgatatggcgctgcgtacccatgagatcccgtacatctggccgaaagcg
gttgaagaacaaattgaaggccttcgtgaagaagtgcctgaagagtctaaagctggccgc
gtggatctgcgcgatctgccactggtgacgattgatggcgaagacgcccgcgacttcgat
gatgcggtgtactgcgagaaaaaacgcggcggcggctggcgcctgtgggttgccatcgcg
gatgtgagctactatgttcgcccgcacaccccgctggataacgaagcgcgcaaccgcggt
acctcggtttacttcccgtcacaggttgtgccgatgctgccggaagtgctctctaacggc
ctgtgctccctgaacccgcaggttgatcgcctctgtatggtttgtgagatgaccatctcc
accaaagggcgcttaacaggttacaaattctacgaagcagtcatgagctcacatgcgcgc
ctgacctataccaaagtctggcatatgctgcagggcgaccaggatctgcgcgaacaatat
gcgccgctggtgaagcacattgaagagctgcataacctctacaaaacgctggatcaggcg
cgtgaagagcgcggcgggatctcctttgagagcgaagaggcgaagtttatcttcaacgcg
gaacgtcgcattgaacgtatcgaacagacccaacgtaacgacgcgcacaagctgattgaa
gagtgtatgatcctggcgaacatctcggcggcacgttttgttgagaaagccaaagagcct
gcgctgttccgtattcacgataaaccgtcgacggaagccatcaccgcgttccgttcagta
ctggctgaactgggtctggagctgcctggtggtaacaagccagagccgcgtgattatgcc
gagctgctggaatccattggcgaccgtccggatgcagaaatgctgcagaccatgctgctg
cgctccatgaagcaggcgatttacgatccggaaaaccgtgggcacttcggtctggcgttg
cagtcctacgcgcactttacgtcgccaattcgtcgttacccggatctttccctgcaccgt
gcaatcaagtatttgctggcgcaggagcagggccataaagggaacacgactgaaaccgga
ggctaccactattcaatggaagagatgctgcaactgggtcagcattgttccatgaccgaa
cgccgcgcggatgaagcgacccgtgaagtctcagactggctgaagtgcgactttatgctg
gatcaggtcggtaacgttttcaaaggtgtgatcgccagcgtgaccggttttggtttcttt
gttcgtctcgatgagctgtttatcgacggtctggtgcatgtctccagcctggataacgac
tactaccgttttgaccaggtcgggcagcgtctcattggcgaatccggcggtcagacctat
cgtctgggcgatcgtgtggaagtgaaggtcgaagcggtcaatatggatgagcgcaagatc
gacttcagcctgatctccagcgagcgtggcccgcgtaatgtgggtaaaacggcgcgtgag
aaggcgaaaaagggtggcaacggtaataccagcggcaaacgtcgtcaggcgggtaagaaa
gtgaacttcgagccagatagcgccttccgcggcgagaagaaaaagaaaccgaaggcagcg
aagaaagaagctcgctccgcgaaaaagccttccgctaagacccaaaaaattgccgccgct
accaaagcgaagcgcgcggcgaagaaaaagcaggcggagtaa
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