Erwinia amylovora ATCC 49946: EAM_0672
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Entry
EAM_0672 CDS
T01199
Symbol
rapA
Name
(GenBank) RNA polymerase-associated protein (ATP-dependent helicase)
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
eay
Erwinia amylovora ATCC 49946
Brite
KEGG Orthology (KO) [BR:
eay00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
eay03021
]
EAM_0672 (rapA)
Transcription machinery [BR:
eay03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
EAM_0672 (rapA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RapA_C
Tudor_1_RapA
Tudor_RapA
Helicase_C
SNF2-rel_dom
ResIII
DEAD
Cas3-like_C_2
AAA_34
COG2_N
Motif
Other DBs
NCBI-ProteinID:
CBJ45347
LinkDB
All DBs
Position
complement(755128..758034)
Genome browser
AA seq
968 aa
AA seq
DB search
MPFTLGQRWISDTESELGLGTVVAVDTRMVTLLFPATGENRLYARNDSPITRVVFNPGDT
ITSHEGWQLNVDEVTTANGVVSYIGTRLDTAETGVVLREVMLDSKLVFGKPQDRLFAGQL
DRMDRFALRFRARKYQSEQYRLATSGLRGMRTSLIPHQLHIAHDVGRRHAPRVLLADEVG
LGKTIEAGMIIHQQLLAGRAERVLIVVPETLQHQWLVEMLRRFNLRFALFDDDRYAQAQL
DSDNPFDTEQMIICSLDFVRRNKQRLAKLADAEWDLMVVDEAHHLVWSEDAPSREYQVIE
QLAGQIPGILLLTATPEQLGMESHFARLRLLDASRFHDFAQFVEEQKHFRLIADAVTMLL
ADKTIGNDALNLLNDLMGEQDIEPLLQTANSDHEGKLAARQELIGMLMDRHGTSRVLFRN
TRNGVKGFPKRELHQIRLPLPTQYQTAIKVSGIMGARKSADERAQDMLYPEQIYQEFEGD
SGTWWNFDPRVEWLMGFLTSNRDKKVLVICAKATTALQLEQVLREREGIRAAVFHEGLSI
IERDRAAAWFASEEDGAQVLLCSEIGSEGRNFQFASQMVMFDLPFNPDLLEQRIGRLDRI
GQAHDIQIHVPYLEKTAQAVLVQWYHEGLDAFEHTCPTGRAVYDSVYASLIEYLAAPEDS
EGLEPFIRQCRKQHDALKAQLEQGRDRLLELNSNGGEKAQALADMIAEQDNHIELVNFAL
NLFDIVGINQEDRSDNLIVLTPGDHMLVPDFPGLPEDGCTITFDRNQALSREDAQYVSWE
HPIIRNGLDLILSGDTGSCAISLLKNKALPVGTLLVELVYVVEAQAPKHLQLTRFLPPTP
VRMLIDRKGTNLAAKVEFESFNRQLNAVNRHTGSKLVSAVQSDVHDIITLSEDQAAAEAR
KVIDAARQEADEKLSAELSRLQALSAVNPNIRQDEIDALESNRQQVLSNLDEAGWRLDAL
RLIVVTHQ
NT seq
2907 nt
NT seq
+upstream
nt +downstream
nt
atgccttttacacttggtcaacgctggataagcgatacggaaagcgaactgggactggga
accgtggttgccgttgatacgcgcatggtcaccctgctgttccctgctacgggcgaaaac
cgtctttatgccagaaatgattctcccatcacccgcgtggtgtttaatcccggtgacacc
atcaccagccatgaaggctggcagctgaacgttgacgaggtcaccactgccaacggcgtg
gtcagttatatcggtacccggctggacaccgctgaaaccggcgtggtgctgcgcgaagtg
atgctcgacagtaaactggtattcggcaaacctcaggaccgcctgttcgccgggcagctg
gaccgcatggaccgcttcgcgctgcgcttccgcgcgcgcaagtatcaaagcgagcagtac
cgcctggcgaccagcggcctgcgcggtatgcgcaccagcctgatccctcaccagctgcat
atcgcccacgatgtcggccgccgccacgctccgcgcgtgctgctggcggatgaggtgggc
ctgggtaaaaccattgaagcggggatgatcattcatcagcagctgctggccggtcgcgcc
gagcgcgtgctgatcgtggtgccggaaacgttgcagcaccagtggttggtagaaatgctg
cgccgctttaatctgcgctttgcgctgtttgatgacgaccgttatgcacaggcacagctt
gacagcgacaacccgtttgataccgaacagatgattatctgttcgctggactttgtccgc
cgcaataaacagcgcctggctaaactggccgatgccgagtgggatttaatggtggtggat
gaagcgcatcacctcgtctggtcggaagacgcgccgagccgcgaatatcaggttatcgaa
cagctggccgggcaaattcccggcatcctgctgctgaccgctaccccggaacagctgggc
atggagagccattttgcccgtctgcgcctgctggatgccagccgtttccacgactttgcc
cagtttgttgaagaacaaaagcacttccgtctgattgccgatgcggtgacgatgctgctg
gccgacaaaaccatcggcaacgatgcgctgaacctgcttaacgatctgatgggcgagcag
gatatcgagccgctgctgcaaacggccaacagcgaccacgaaggcaagctggcagcacgt
caggagctgatcggcatgctgatggaccgtcacggcaccagccgcgtgctgttccgtaac
acccgtaacggcgtgaagggcttcccgaaacgtgaactgcaccagatccgcctgccgctg
ccgacgcagtaccagacggccattaaagtgtccggcattatgggcgcacgtaaaagcgcc
gacgaacgcgcccaggatatgctctacccggagcagatctatcaggagtttgagggcgac
agcggcacctggtggaacttcgacccgcgcgtcgaatggctgatgggctttctgaccagc
aaccgggacaaaaaggtgctggtgatctgcgccaaagcgaccaccgccctgcagctggag
caggtactgcgcgagcgcgaaggcattcgtgccgcggtattccatgaggggctgtcgatc
attgagcgcgatcgcgctgcggcatggtttgcctcagaggaggacggcgctcaggttctg
ctgtgctcagagatcggttctgaagggcgtaacttccagttcgccagccagatggtgatg
tttgacctgccgttcaacccggacctgctggaacagcgtattggccgtcttgaccgtatt
ggccaggcgcacgatattcagatccacgttccttacctggaaaaaaccgcccaggcggtg
ctggtgcagtggtaccacgaggggctggatgcctttgagcacacctgcccgaccgggcgt
gcggtgtacgacagcgtctacgcctcgctgattgagtaccttgccgcgccggaagacagc
gaaggcctggagccgtttatccggcagtgccgcaaacagcatgatgcgctgaaggcgcag
ctggagcaggggcgtgaccgcctgctggagctgaactccaacggcggcgaaaaagcccag
gcgctggcggatatgattgccgaacaggataatcatatcgaactggtgaactttgcgctc
aacctgttcgatatcgtcggcatcaatcaggaagatcgcagcgataatctgatcgtcctg
acgcccggcgaccatatgctggtgccggacttccccggtctgccggaagatggctgtacc
atcacttttgaccgcaaccaggcgctgtcgcgtgaagatgcccagtacgtcagctgggag
cacccgatcatccgcaacggtctggatctgatcctttccggcgataccggcagctgcgcc
atttcactgctgaagaataaggcgctgccggtcggtacgctgctggtggaacttgtctac
gtggtggaagcccaggcaccgaagcatctgcagctcacccgcttcctgccgccaacgcct
gtccgtatgctgattgaccgcaagggcaccaatctggcggcaaaagtcgagtttgagagc
ttcaaccgccagcttaatgcggtcaaccgccataccggcagcaagctggtgagcgcggtg
cagtcggatgtgcatgacattatcaccctgtcggaagatcaggccgccgcagaggcgcgt
aaagtgatcgacgccgcccgtcaggaagccgacgagaagctgagcgccgaactgtcacgc
ctgcaggcactgagcgcggtgaatccgaacatccgccaggatgaaattgacgcgctggaa
agcaaccggcagcaggtgttgagcaatctcgatgaagcgggctggcgtctcgacgcgctg
cgtctgatcgtcgtgacgcaccaataa
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integrated database retrieval system
