Erwinia amylovora ATCC 49946: EAM_1226
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Entry
EAM_1226 CDS
T01199
Symbol
rhlE
Name
(GenBank) putative ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
eay
Erwinia amylovora ATCC 49946
Pathway
eay03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eay00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EAM_1226 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eay03019
]
EAM_1226 (rhlE)
Enzymes [BR:
eay01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EAM_1226 (rhlE)
Messenger RNA biogenesis [BR:
eay03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EAM_1226 (rhlE)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UvrD-helicase
Utp25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
CBJ45901
LinkDB
All DBs
Position
1331675..1333087
Genome browser
AA seq
470 aa
AA seq
DB search
MSFDSLGLNADILRAVAEQGYNEPTPIQRQAIPVVLAGRDLMASAQTGTGKTAGFTLPLL
QLLSSHNPHPKGRRPVRALILTPTRELAAQVGENVQDYSKYLDMRSLVVFGGVSINPQMM
KLRGGVDVLVATPGRLLDLEHQNALDLSKVEILVLDEADRMLDMGFIHDIRRVLAKLPAK
RQNLLFSATFSDEIKTLAEKLLHNPEQVEVARRNTASEQVTQHVHLVDKKRKRELLSLLI
GRGNWQQVLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALSDFKDGKIRVLV
ATDIAARGIDIEELPHVVNYELPNVPEDYVHRIGRTGRAAAVGEALSLVCVDEHKLLRDI
ERVLKREIPRMAIDGFEPDPAIKAEPIINGRQQQRGGGGGGRGRGGQGQAPRGGGDRSAS
ANRNGNGGERRQGNGNGAGAVRGARSEGGNAGAPRVNKTRPRRANPANNG
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttgattctctcggcctcaatgccgatattttgcgcgctgttgcagaacagggc
tataacgagccgacgcctattcagcgtcaggcaatcccggtagtgcttgctggacgagac
ctgatggccagcgcccagacgggtacgggtaaaaccgccggctttactctgccattactg
cagctgttgagcagtcataatccgcacccgaagggccgccgaccagtgcgcgcgctgatc
ctgaccccgacccgtgagctggcggcccaggttggtgaaaacgtgcaggattacagcaaa
tatcttgatatgcgttcgctggtggtatttggcggcgtcagcattaatccacagatgatg
aaacttcgcggcggcgtggacgtgctggtggcaacgcctggccgtctgctggatcttgaa
catcagaatgcgcttgacctgtcgaaagtggaaatcctggtgctggacgaagcggaccgt
atgctggatatgggttttattcatgatatccgccgcgtgttggcaaaactgccggccaaa
cgccagaatctgctgttctcggcgaccttctctgacgaaatcaaaaccctggcggaaaag
ctgctgcacaatcccgaacaggtggaagttgcccgccgcaataccgcatccgagcaggtg
acccagcatgttcacctggtagacaaaaaacgcaagcgggagctgctgtccttgctgatt
gggcgcggcaactggcagcaggtgctggtgtttacccgtaccaaacatggtgctaaccac
ctggccgaacagctgaataaagatggcatcaccgccgcagccattcacggtaataagagc
cagggcgcacgtacccgcgcactgagtgatttcaaagacggtaaaatccgcgtgctggtg
gcaacggacattgccgcgcgcggtatcgatatcgaagagctgccgcacgttgtgaactac
gaattgcctaatgtgccggaggactatgttcatcgcatcggtcgtaccggtcgtgcggcg
gcggtcggtgaagcgttgtcgctggtgtgcgtcgacgagcacaagctgttacgcgatatc
gaacgtgtgctgaagcgtgagatcccgcgtatggcgatcgacggttttgaaccggatcca
gccatcaaagccgagccgatcatcaacggtcgtcagcagcagcgcggcggtggtggtggc
ggacgtgggcgcggcggtcagggccaggcaccccgtggcggcggcgatcgtagcgccagc
gcaaaccgtaacggcaatggcggtgaacgccgccagggtaacggcaacggtgccggtgcc
gtgcgcggcgcacgctccgaaggcggcaacgcgggagcaccccgcgtcaacaaaacccgt
ccacgccgcgccaacccggcaaataacggctaa
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