Erwinia amylovora ATCC 49946: EAM_1450
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Entry
EAM_1450 CDS
T01199
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
eay
Erwinia amylovora ATCC 49946
Pathway
eay03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eay00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EAM_1450 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eay03019
]
EAM_1450 (rne)
03009 Ribosome biogenesis [BR:
eay03009
]
EAM_1450 (rne)
Enzymes [BR:
eay01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
EAM_1450 (rne)
Messenger RNA biogenesis [BR:
eay03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EAM_1450 (rne)
Ribosome biogenesis [BR:
eay03009
]
Prokaryotic type
rRNA processing factors
EAM_1450 (rne)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
CBJ46125
LinkDB
All DBs
Position
complement(1572178..1575717)
Genome browser
AA seq
1179 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEISREYFPSHYNAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALSSLELPDGMGLIVRTAGVGKSAEAL
QWDLGFRIKHWEAIKKAADSRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA
RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLA
LSILRLIEEEALKENTKEVHAIVPVQVASYLLNEKREAVSAIEKRQGGVRAIIVPNDNMQ
TPHYSVLRVRSGEETQTLSYHLPKLHEAEMALPSEEEHAERKSPEQPALAAFVMPDAPPA
PHEVAVVPAVTKAAVKTPAPASPAQPGLVSRIVSGLKKLFAAPEKPAQQPPQPAVEEKSA
EASAPRGERRNNRRQNNRRDRNGDRNERNDRNERNDRNDRSAERNERAPRERSNENREGR
DDRRNNNRRNAQQTDARSERMVPDEFERSETTPPRQPRQDRQRRRSGQNQEEKRPLVQEE
KIPEPVVENVPAPEVEEQSVEVMPRRKQRQLNQKVRIETAEQTAARSFAPDESEPAVPAV
GESVVETEDHDDRDGNNMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLAHAAASPE
SASGKVWISYPVAQVSDHETHEEHPHSVVPAYGHADKAQPEAVDTAATVAMHASVTESIA
APAVEAAPAVESAPAVKAAPAVEAAPAVEAAPAVKAAPAVKAAPAVEAAPAVEAAPAVKA
APAVEAAPAVKAAPAVESASAMEQAEAVEIVEAASVHQPEITPVAAEDSAAIDAPVNQQP
AVISAADEAVAAKTAAEAVPAEPVKPEPAEAVSVNAVDVSVQQAAATTRVAPVEPGTEVK
QQVVAVQNSPEAAAEQHSAAEEPHAPLPARDEPVDSAPLQAGLYKHHATAPMTKAPAPAY
QPEPERHSDWVRPAFNFEGKGAAGAHTASHLATAPATRP
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctgataaacgccactcagcaagaagagttgcgtgttgcccttgtcgat
ggacagcgcctgtacgatctggacattgaaagtccggggcacgaacagaaaaaagccaat
atctataagggcaagatcacccgtattgaacccagtcttgaagccgcatttgttgattat
ggcgccgaaaggcacggctttctgcctctgaaagaaatttcccgcgaatacttcccttct
cattacaacgctcatggccgtcccaatatcaaggatgtgctgcgtgaaggtcaggaagtg
attgttcagatagataaagaagagcgcggcaataaaggtgcagctctgaccacttttatc
agtctggcgggaagttatctggtattgatgccgaataacccgcgtgctggcggtatctcg
cgccgcattgaaggtgatgaccgtaccgaactgaaagaagcgctctcctcgcttgaacta
cccgacggcatgggcctgattgtgcgcaccgccggcgtgggcaaatctgccgaagccctg
cagtgggatttaggtttccgcatcaagcactgggaagccattaagaaagccgctgacagc
cgcccggctccgtttctgatccatcaggaaagcaacgtcattgtacgggcttttcgtgac
tatctgcgccaggacattggcgaaatcctgattgataacccgaaggtgcttgagctggcg
cgccagcatatcgccgccttgggacgcccggatttcagcagcaaaatcaagctttacacc
ggtgaaattcccctgttcagccattaccagatcgagtcgcagattgaatccgctttccag
cgtgaagtgcgcctgccttcaggcggttcgattgtcattgacaccaccgaagcgctgacc
gctattgatatcaactctgcccgcgccactcgcggcggcgatatcgaagagacggcattt
aatactaaccttgaagctgccgacgagattgcccgccagctgcgcctgcgtgacctcggt
ggtctgatcgtcatagactttattgatatgaccccggttcgccatcagcgtgcggttgaa
aatcgcctgcgggaagcggtacgtcaggatcgtgcacgcatccagatcagccatatttcc
cgtttcggcctgctggagatgtcgcgtcagcgtctcagtccgtcactgggtgagtccagc
catcacgtatgcccgcgctgtagcggcaccggcacgatccgtgacaatgaatcgctggcg
ctctctattctgcgtctgattgaagaagaagcgctgaaagagaataccaaagaagtccac
gccatcgtgccggtacaggtggcctcctacctgctgaacgaaaagcgtgaggcggtaagc
gccattgagaaacgccagggcggcgtacgcgctattatcgtccctaacgataatatgcag
actccgcactattcggtactgcgcgtgcgcagtggtgaagaaactcagacgttgagctat
cacctgccgaaactgcatgaagctgaaatggcgctgccttctgaagaagaacacgccgag
cgcaaaagcccggagcagcctgccctcgccgcttttgtgatgccagatgcaccaccggca
ccgcatgaagtcgcggttgtacccgccgtgacaaaagccgcggtcaaaaccccggcccct
gcttctccagcccagccaggcctggttagccgcatcgtcagcggcttgaagaaactgttt
gctgcgccagagaagccagcgcaacagccaccgcagccggcagttgaagagaaaagcgct
gaagcctccgcaccgcgcggcgagcgtcgtaacaatcgccgtcaaaataaccgtcgtgat
cgtaacggcgatcgcaacgagcgtaatgaccgcaacgagcgtaatgaccgcaacgatcgc
agcgcagagcgtaacgaacgcgcaccgcgtgagcgcagtaacgaaaaccgcgaaggtcgt
gacgaccgccgtaataacaatcgtcgcaatgcgcagcaaaccgatgcgcgcagtgaacgt
atggtgccggacgagttcgagcgcagcgaaaccactccgccacgccagccgcgtcaggat
cgccagcgtcgccgttctggtcaaaatcaggaagaaaaacgtcctctggtgcaggaagaa
aaaatccctgagccggtagtcgaaaacgtgcccgctcctgaggttgaagagcagagcgta
gaggtgatgccgcgccgtaaacagcgccagcttaaccagaaagtgcgtattgaaaccgct
gaacagactgcagcccgctcgttcgcgcccgatgagagcgaacctgctgttcctgccgtt
ggcgagtccgtagtggaaacggaagatcatgacgatcgcgatggtaacaatatgcctcgt
cgctctcgccgatcgccgcgccacctgcgggttagcggtcagcgccgacgtcgctaccgt
gacgagcgctatcctacacagtcacctatgccgctggctcacgccgccgcatcgccggaa
tcggcgtcaggtaaagtgtggatttcctacccggtagcccaggttagcgaccatgaaacc
catgaagagcatccccattctgtggtgcctgcctacggccatgctgataaagcccagccg
gaagcggtggacacggcggcaaccgttgcaatgcacgccagcgtgacggaaagcattgca
gctccggcggtggaagcagctccggcggtggaatcagctccggcggtgaaagctgccccg
gcggtggaagctgccccggcggtggaagctgctccggcggtgaaagctgccccggcggtg
aaagcagctccggcggtggaagcagctccggcggtggaagctgctccggcggtgaaagct
gccccggcggtggaagctgctccggcggtgaaagctgctccggcggtggaatcagcttcg
gcgatggaacaggccgaagctgtagagattgtcgaagcagcgtcagttcatcagcctgaa
attaccccggtagcggccgaagatagcgcagctattgatgctccggtcaatcagcagcct
gcggtgatttccgctgcggatgaagcggtagcggcaaaaacggcggccgaagccgtcccg
gctgaaccagtgaagcccgaacctgcagaagcggtgtctgttaatgcggtggatgtgtcc
gtacagcaggctgcagccaccacccgcgtagcccccgtggaacctggcacagaggttaag
cagcaggttgtcgcggtgcagaactcgcccgaggcagcggcagaacagcattcagcagca
gaagaaccccacgcaccgcttccggcgcgcgatgaaccggtcgattctgccccgctgcag
gcgggtctttataagcatcatgctaccgctccgatgaccaaagcgccggccccggcttat
caacccgagcctgagcgtcacagcgattgggtacgtccggccttcaacttcgaaggtaag
ggagcggctggcgctcatacagccagtcatctggctacggctccggcaacccgcccgtaa
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