Erwinia amylovora ATCC 49946: EAM_1475
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Entry
EAM_1475 CDS
T01199
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor (TrcF)
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
eay
Erwinia amylovora ATCC 49946
Pathway
eay03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
eay00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
EAM_1475 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
eay03400
]
EAM_1475 (mfd)
Enzymes [BR:
eay01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EAM_1475 (mfd)
DNA repair and recombination proteins [BR:
eay03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
EAM_1475 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
MFD_D3
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
RecG_dom3_C
DUF6007
Motif
Other DBs
NCBI-ProteinID:
CBJ46150
LinkDB
All DBs
Position
complement(1598162..1601608)
Genome browser
AA seq
1148 aa
AA seq
DB search
MPELYRYDLPSRAGDQRQLGQLIGAACAVECAEIAERHHGPVMLIAQDMQNALRLQDEIQ
QFTDQPVMALADWETLPFDSFSPHQEIISSRLSTLYQLPTLASGILILPVNTLMQRVCPH
NFLHGHALMMQKGQKLSRDKLRSQLEQAGYRSVDQVMAHGEFATRGALLDLYPMGSERPY
RIDFFDDEIDSLRLFDVDSQRTQEEVAAINLLPAHEFPTDKNAIELFRSQWREHFDVRRE
AEHIYQQVSKGTLPAGIEYWQPLFFEQPLQPLFRYLPANTLLVISGDLESSAGRFWHDVN
ARYENRRVDPMRPLLPPTSLWLRSDELFSELKQWPRIQLKTDLLAAKSGNTNLDYHALPD
LAVQAQAKTPLDALRRFLESFNGPVVFSVESEGRREALQELLARIKLKPAAIHSLLQARE
PGHYLLIGASEHGFIDGLRNRALICESDLLGERVSRRRQDSRRTINPDVLIRNLAELHPG
QPVVHLEHGVGRYIGMTTLETGGIKAEYLMLAYAGDAKLYVPVSSLHLISRYAGGAEENA
PLHKLGSDAWSRARQKAAEKVRDVAAELLDIYAQRAAKTGFAFKHDKQQYQLFCESFPFE
TTVDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTL
LAQQHYDNFRDRFANWPVRIEMMSRFRTAKEQAQVLADAQEGKVDILIGTHKLLQNDIKL
RDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP
ARRLAVKTFVREYDDLAVREAILREVLRGGQVYYLYNDVENIEKATQRLSELVPEARVAL
GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADRFGLAQLHQLR
GRVGRSHHQAYAWLLTPHPKAMTTDAHKRLEAIASLEDLGAGFALATHDLEIRGAGELLG
EGQSGQMETIGFSLYMELLENAVDALKEGREPSLEDLTNSQTDIELRMPSLLPDDYVPDV
NTRLSFYKRIASASQSRELDALKVELIDRFGLLPDAARNLLDIAALRLAAKKLGVRRVEA
SEKGGFVEFAEKNNVDPAWLIGLLQREPQHWRLDGPTRIRFMRDLTERKVRMKWVSEFIE
MMVEHASA
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgccagaactctaccgatatgacctgccgtccagagcaggtgaccagcgccagctgggg
caactgatcggcgcagcctgcgccgttgaatgtgccgaaatagcagaacgacatcacggc
ccggtgatgcttattgcccaggatatgcaaaatgctctgcgccttcaggatgaaatccaa
cagttcaccgaccagccggtgatggcgctggcggactgggaaaccctgcccttcgacagt
ttctcgccccatcaggagatcatttcctcccggctttccaccctctatcagcttccgacg
ctggcaagcggcatattgatcctgccggtgaatacgctgatgcagcgcgtctgcccgcac
aatttcctgcatggtcacgcgctgatgatgcagaaggggcaaaaactgtcgcgtgataaa
ctgcgttcccagctggaacaggctggctaccgcagcgtggaccaggtgatggcgcacggc
gagtttgccacccgtggcgcattgctggatctctatccgatgggcagcgaacgcccctac
cgcatcgacttttttgatgatgaaatcgatagcctgcgcctgttcgacgtcgacagccag
cgcactcaggaagaggtggcggcaatcaacctgttgccggcccacgaattcccgactgat
aaaaacgccattgagctgttccgcagccagtggcgtgaacacttcgacgtccggcgtgag
gccgagcatatctatcagcaggtgagcaaaggcacgctgcctgccgggattgaatactgg
cagccgctgttttttgaacagccgttacagccattgttccgctatctgcccgccaacacc
ctgctggtgatttcaggcgatttggaatccagcgccgggcgtttctggcatgacgttaac
gcccgctatgaaaaccgccgtgtcgacccgatgcgcccgttattaccccccacttccctg
tggttacgcagcgatgaactgtttagtgagctgaagcagtggccgcgcatccagctgaaa
accgatctgttggccgcgaaaagcggcaatactaatctcgattatcacgcgttgccggat
ttggcggtacaggcccaggccaaaaccccgctggatgcgctgcgccgctttctggaatcc
ttcaatggcccggtggtgttttcggtggaaagcgaaggccgccgcgaagccttgcaggag
ctgctggcacgcatcaagctgaagccagccgccatccactcgctgttgcaggcgcgggaa
ccgggtcattacctgttaatcggtgccagcgagcatggttttattgacggattacgcaac
cgtgcgctgatttgtgaaagcgatctgttaggtgagcgcgtcagccgtcgtcgtcaggac
agtcgccgcaccatcaatccggacgtattaattcgtaatctggccgagctgcatcccggc
cagccggtggtacatctggaacatggcgtcgggcgctatatcggcatgaccacgctggaa
accggcggcataaaggcagaatacctgatgctggcctatgccggggatgccaaactgtac
gtcccggtatcgtcactccatttgatcagccgctatgccgggggcgcggaagagaacgcc
ccgttgcacaagctgggcagcgacgcctggtcgcgcgcccgccagaaggcggcggagaaa
gtgcgcgatgtggccgcagagctgctggatatctacgcgcagcgtgcggcgaaaacgggc
tttgcatttaaacatgataaacagcagtaccagctgttttgtgaaagttttccgtttgaa
accaccgtcgaccaggcacaggcgatcaatgccgtgctgagcgatatgtgccagccgctg
gcaatggatcgtctggtatgcggtgacgttggctttggtaaaaccgaagtcgccatgcgc
gccgcctttctggcggtagaaaaccacaagcaggtggcggtgctggtgcccactaccctg
ctggcacagcagcactacgacaacttccgcgatcgctttgccaactggccggtgcgtatt
gagatgatgtcacgcttccgaacggctaaagagcaggcacaggtgctggcagacgcacag
gaaggaaaagttgatattctcatcggcacccataagctgttgcagaatgacatcaaattg
cgcgatctcggcctgctgattgtcgatgaagagcaccgctttggcgtgcggcataaagag
cgcattaaggcgatgcgcgcggacgtcgatattcttaccctgaccgctacgccgatccca
cgtaccctgaatatggcgatgagcgggatgcgcgatttgtcgatcatcgctacgcctccg
gcgcgccggctggcggtaaaaaccttcgtacgcgaatatgatgatttggcagtgcgcgaa
gccattctgcgtgaggtactgcgcggcggccaggtttactatctgtataacgatgtcgaa
aatattgagaaggcgacccaaaggctgtccgaactggtgccggaagccagggtggctctt
ggacacggtcagatgcgcgagcgcgagctggaacgggtgatgaatgatttccaccaccag
cgctttaacgtgctggtgtgtactactattatcgaaaccggtattgatattccaaccgca
aacaccatcattattgagcgcgccgaccgcttcggcctggcacagctgcaccagctgcgt
ggccgcgtcggacgttctcaccatcaggcttatgcctggctgctgacgccacatcctaaa
gcgatgaccaccgatgcgcataaacgtcttgaggccatcgcctcgctggaggatctgggg
gctgggtttgctctcgctacgcacgatctggagatccgtggcgccggagaattgctgggt
gagggtcagagcggccagatggaaaccatcggcttctcactgtatatggagctgttggaa
aacgccgtcgatgcgctgaaagaagggcgtgaaccttcgctcgaagatttgaccaatagt
cagaccgatattgagctgcgtatgccgtcgctgctgccggatgattatgtccccgacgtc
aatacccgcctgtcgttttataagcgtattgccagcgcctcgcagagccgcgagctggat
gcccttaaggtggagctgattgaccgtttcggcctgttgccggatgcagcccgcaatctg
ctggatatcgccgcgctgcgtctggcggcgaaaaagctcggcgtacgccgtgtagaagcc
agcgagaaaggcgggtttgtcgaatttgccgagaaaaacaacgttgatcccgcgtggttg
atcggccttttacagcgggaaccgcaacactggcgccttgatggaccaacccgcatcagg
tttatgcgtgacctgacagaacgcaaagtgcgcatgaaatgggtcagtgagtttattgaa
atgatggttgaacacgccagcgcttaa
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integrated database retrieval system
