Erwinia amylovora ATCC 49946: EAM_2525
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Entry
EAM_2525 CDS
T01199
Symbol
srmB
Name
(GenBank) ATP-dependent RNA helicase
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
eay
Erwinia amylovora ATCC 49946
Brite
KEGG Orthology (KO) [BR:
eay00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
eay03009
]
EAM_2525 (srmB)
Enzymes [BR:
eay01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EAM_2525 (srmB)
Ribosome biogenesis [BR:
eay03009
]
Prokaryotic type
rRNA helicases
EAM_2525 (srmB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_11
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
CBJ47199
LinkDB
All DBs
Position
2758936..2760264
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AA seq
442 aa
AA seq
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MTVTTFSELELDESLLQSLQEKGFTRPTAIQAEAIPPALEGRDVLGSAPTGTGKTAAYLL
PALQHLLDFPRKKSGPPRILILTPTRELAMQVADQARELAKHTRLDIATITGGVAFMNHA
EVFSENQDVVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETISAETRW
RKQTLLFSATLEGEAIKDFAERILNEPVEIEADPARRERKKIQQWYYRADDIKHKTALLL
HLLKQPEVTRAVVFVRKRERVHEVCGWLREAGINSSYLEGELVQAKRNEAIKRVVDGRVN
VLVATDIAARGIDIDDVSHVINFDMPVTSDTYLHRIGRTGRAGKKGIAISLVEAHDNLLL
GKIIRYVKEPIKARVIDQLRPTTRAPNEKLKGKPSKKVLAKRVEQKNKQKAEEKPRVKER
HRNSKNIGKRRKPTSAKTDSAE
NT seq
1329 nt
NT seq
+upstream
nt +downstream
nt
atgactgtaaccactttttccgaacttgaacttgacgagagcctgctgcagtccctgcag
gagaaaggcttcacgcgccccacggctattcaagccgaggctatcccgccagcactggag
ggtcgtgatgttctgggttcggcaccaaccggtacaggcaagactgcggcctatctgctg
cccgcgctccaacatttgctcgacttcccgcgtaagaagtcaggcccgccgcgtattctg
atcctgacccccacccgtgaactggctatgcaggtcgccgatcaggcgcgcgagctggca
aaacacacccgtctggatattgccaccatcaccggcggcgtggcgtttatgaaccacgct
gaggtgttcagcgaaaatcaggacgtggtcgttgcgactaccgggcgtctgctgcaatac
attaaggaagaaaacttcgactgtcgcgcagtcgaaacgctgatcctcgatgaagccgac
cggatgctggatatgggctttgctcaggatatcgaaaccatctcggcagaaacccgatgg
cgcaaacaaacgctgctgttctccgccacgctggaaggcgaagctatcaaagatttcgcc
gagcgtattcttaacgaaccggttgaaatagaagccgatccggcacggcgcgaacgcaaa
aaaattcagcagtggtattaccgtgcggatgacatcaaacacaaaaccgcgctgttactg
catttgctgaaacagccagaggttacgcgtgccgtagtgtttgtgcgtaagcgtgagcgc
gtgcatgaagtctgtggctggctgcgtgaagcaggtatcaacagcagctatcttgaaggg
gagctggtacaggccaaacgtaacgaggcgattaagcgcgtggttgacggccgggtgaac
gtgctggttgccaccgacatcgccgcacgcggcatcgacattgatgatgtcagccatgtg
attaacttcgatatgccggttacctccgatacctatctgcaccgcattggccgcaccggg
cgtgctggcaaaaaaggcatcgccatctcactggttgaagcgcatgacaatctgctgctg
ggtaaaatcatccgctacgttaaagagccgataaaagcacgcgtcattgatcaactgcgc
ccgaccacgcgtgcaccaaacgaaaaactgaaaggcaagccctcgaagaaagttctggct
aagcgcgttgaacaaaaaaataaacagaaagcggaagagaagccacgcgtgaaagagcgc
catcgcaacagcaaaaacattggtaagcgccgtaagccaaccagcgccaaaacagactcc
gctgaatag
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