Erwinia amylovora ATCC 49946: EAM_3065
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Entry
EAM_3065 CDS
T01199
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase (cold-shock dead-box protein)
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
eay
Erwinia amylovora ATCC 49946
Pathway
eay03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eay00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EAM_3065 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eay03019
]
EAM_3065 (deaD)
03009 Ribosome biogenesis [BR:
eay03009
]
EAM_3065 (deaD)
Enzymes [BR:
eay01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EAM_3065 (deaD)
Messenger RNA biogenesis [BR:
eay03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EAM_3065 (deaD)
Ribosome biogenesis [BR:
eay03009
]
Prokaryotic type
rRNA helicases
EAM_3065 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
Cas3-like_C_2
DRTGG
AAA_22
Motif
Other DBs
NCBI-ProteinID:
CBJ47739
LinkDB
All DBs
Position
complement(3357257..3359173)
Genome browser
AA seq
638 aa
AA seq
DB search
MTDIQTTFADLGLNADLLESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAF
SLPLLHNIDPTVKAPQILVLAPTRELAVQVAEAVTEFSKHMRGLNVVALYGGQRYDVQLR
ALRQGPQVVVGTPGRLLDHLKRGTLDLSNLRGLVLDEADEMLRMGFIEDVETIMAQIPDG
HQTALFSATMPEAIRRITKRFMKDPQEVRIQSSMTTRPDISQSYWTAYGRKTDALTRFLE
AEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA
TDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE
RTMKLTIPEVELPNAELLGQRRLAKFAAKVQQQLESSDLEQYRALLSKMQPEDELDIETL
AAALLKMAQGERPLIVPADAPQRPRREFRDRDDRRDDRRGDRPDRGPREARGEAREGDRP
RRERRDVGDMEVYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGTHSTIELPKG
MPGDVLQHFTRTRILNKPMNMQLIGDAQPRSNIGGGERRPGGPARGGFGAGAGREGGRAG
EGGGRRFSSERGGERRPAGNRGPRRDEGGSAPARRRDA
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
atgactgatatccaaactactttcgctgaccttggcctgaacgccgacctccttgaatca
ctgaacggcatgggctacgtaaagccatctcccatccaggctgaatgtattcctcacctg
ctggcaggtcgtgacgtgttaggtatggcgcagaccgggagtggcaaaacagctgcattt
tcgctgccacttttacataacatcgatcctacggtgaaagcaccacagatcctggtgctg
gcacctacccgcgaactggcggttcaggtagcagaagctgtcactgaattctctaaacat
atgcgcggtctcaacgttgttgccctttacggtggccaacgttacgacgtgcagctgcgc
gctctgcgccaggggccacaggttgttgtcggcacacctggtcgtctgctcgaccacctg
aaacgcggcacgttggacctgtctaatctgcgcggcctggtgctggatgaagccgatgaa
atgctgcgtatgggcttcatcgaagacgttgaaacgattatggcgcagatcccagacggt
catcagaccgcgttgttctctgccacgatgccagaggcgattcgccgtattaccaaacgc
tttatgaaggatccgcaggaagtgcgtatccagtcaagcatgaccacgcgccctgacatc
agccagagctactggacagcctacggccgtaagactgatgcgctaacccgcttccttgaa
gctgaagactttgatgcagcgattattttcgtgcgtaccaaaaatgccacgctggaagtc
gccgaagcgcttgagcgcaacggttacaacagcgccgcgctcaacggtgacatgaaccag
gcactgcgtgagcagacgctggaacgtttgaaagatggccgtctggatattctgatcgcc
accgacgttgccgcccgtgggctggacgttgagcgtatcagcctggtcgttaactacgac
attccaatggacgcagaatcttacgtgcaccgcatcggtcgtaccggtcgtgcgggtcgt
gctggccgcgctctgctgttcgttgagaaccgcgagcgtcgcctgctgcgtaacattgaa
cgcaccatgaagttgactattcctgaagtggagctgccaaacgcagaattgctgggtcag
cgtcgcctggcgaagtttgccgcgaaagttcagcagcagctggaaagcagcgatctggaa
cagtaccgtgcgctgctgtccaaaatgcagccggaagacgagctggacattgaaactctg
gccgcagcgttgctgaaaatggctcagggcgaacgtccactgattgtccccgctgatgcg
ccacagcgtccgcgtcgcgaattccgcgatcgtgatgaccgtcgtgacgatcgtcgcggt
gaccgtccggaccgtggcccgcgcgaagcgcgtggtgaagcacgcgagggcgaccgtcca
cgtcgtgaacgccgtgacgtgggcgatatggaagtctaccgcattgaagtgggtcgggat
gatggcgttgaagttcgtcacatcgttggcgctatcgctaacgaaggcgatatcagcagc
cgttacatcggcaacatcaagctgtttggcacgcactcaactatcgagctgccaaaaggc
atgccgggcgatgtgctgcaacactttacccgcacgcgcatcctcaacaaaccgatgaat
atgcagctgattggtgatgcacagccacgcagcaacatcggtggtggtgagcgtcgtcct
ggtggtcctgcacgtggcggtttcggtgctggcgcaggtcgcgaaggcgggcgcgctggt
gaaggcggcggccgtcgtttcagcagcgaacgcggtggtgagcgccgtccagcgggcaac
cgtggcccacgccgcgatgaaggtggcagcgccccagcgcgtcgtcgtgatgcgtaa
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