Aromatoleum aromaticum: ebA3500
Help
Entry
ebA3500 CDS
T00222
Symbol
cho
Name
(GenBank) Nuclease subunit Cho of the excinuclease complex (UvrC homolog protein)
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
eba
Aromatoleum aromaticum
Pathway
eba03030
DNA replication
eba03430
Mismatch repair
eba03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
eba00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ebA3500 (cho)
03430 Mismatch repair
ebA3500 (cho)
03440 Homologous recombination
ebA3500 (cho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
eba03032
]
ebA3500 (cho)
03400 DNA repair and recombination proteins [BR:
eba03400
]
ebA3500 (cho)
Enzymes [BR:
eba01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
ebA3500 (cho)
DNA replication proteins [BR:
eba03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
ebA3500 (cho)
DNA repair and recombination proteins [BR:
eba03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
ebA3500 (cho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
GIY-YIG
DUF7508
DNA_pol_A_exo1
Motif
Other DBs
NCBI-ProteinID:
CAI08098
UniProt:
Q5P3L6
LinkDB
All DBs
Position
2067011..2068420
Genome browser
AA seq
469 aa
AA seq
DB search
MSLPDSLVLIDVETTGANPVSDRVTEIAVLRIERGEIVGRWESLVNPERPIPALIQRLVG
ITDEMVAGAPTFAELADSVRGHLDGAVFVAHNARFDYGFIRNEFSRLGQQFEASVLCTVK
LSRALYPEHHRHGLDALIERHGFTCGARHRAMGDTDVLWQFARLVSGSFSADVLALACAR
AMKLPARPPGLPEGALEGVPDAPGVYSFFGENDRLLYIGRSASLRARVMEHFSPGRADSE
AGLARQVRRVEWEETAGEFAASLREADLLRARRPLHARPAVGGEDVFGLRLVPQRKRAPI
FERVPLHATDPAAWEAVHGTFRTRKEADSLLRELAQLYQLCPRRLGLEGGSGACGAHEAR
RCAGVCTGKESIAAHDARLAGALGSVTLREWPWVGAVVIEERCAHSGCEAFHLVDHWCHL
GSADSAEALVALLHNPPARRFDLDTYRLLVRWFAAEANLAAVRPVEDPG
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcttcctgattcgctggtcctgatcgacgtcgagacgacgggggcgaatcccgtg
tccgaccgcgtcacggagatcgccgtgctgcgcatcgagcgcggtgagatcgtcgggcgc
tgggaaagcctcgtcaacccggaacgcccgatcccggcgctgatccagcgtctggtcggc
atcaccgacgagatggtcgccggggcaccgacgttcgccgaactcgccgacagcgtgcgc
gggcatctcgacggggcggtgttcgtcgcccacaacgcgcgcttcgattacggtttcatc
cgcaacgagttctcccgcctcggccagcagttcgaggcgtcggtgctgtgcaccgtcaag
ctttcccgcgcgctgtacccggaacaccatcgtcacggactggacgcgctgatcgagcgg
cacggtttcacctgcggcgcgcgccaccgggcaatgggcgataccgacgtgctgtggcag
tttgcgcgcctggtctccggctccttttccgccgacgtgctcgcgctcgcatgcgcgcgg
gcgatgaagctgccggcccggccgcccggactgcccgaaggggcgctcgagggcgtgccg
gatgcaccgggcgtgtattcgtttttcggtgaaaacgaccggctgctgtacatcgggcgc
agcgcgagcctgcgggcgcgcgtcatggagcatttttcgccgggccgcgcggacagcgag
gcgggactcgcgcgccaggtgcgccgcgtggaatgggaggagactgccggcgagtttgcc
gcgtcgctgcgcgaagccgacctgctcagggcgcgccggccgcttcatgcccggccggcg
gtaggcggcgaggacgtgttcggcctgcgtctcgtgccgcagcgcaagcgcgcgccgatc
ttcgagcgcgtgccgctgcatgcgaccgatccggcagcctgggaagcggttcacggcact
tttcgcacccgcaaggaggccgacagcctgttgcgggaactcgcccagctctaccagctg
tgcccgcgccggctcggtctcgaaggcggcagcggcgcctgcggcgcgcacgaggcgagg
cgctgcgccggcgtgtgcaccggcaaggaaagcatcgccgcgcacgatgcgcgcctcgcg
ggagcgctcgggtcggtgacgctgcgggaatggccatgggtgggcgcagtcgtgatcgag
gagcgctgtgcgcattcgggatgcgaagcgttccatctcgtcgatcactggtgtcatctg
ggcagcgcggacagcgccgaggcgctcgtggcgctgctccacaacccgcccgcacggcgc
ttcgacctcgacacttaccgcctgctggtgcgctggttcgctgcagaggcgaacctggcc
gccgtgcgaccggtcgaagatcccggctga
DBGET
integrated database retrieval system
