Aromatoleum aromaticum: ebA3818
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Entry
ebA3818 CDS
T00222
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase, beta chain
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
eba
Aromatoleum aromaticum
Pathway
eba03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
eba00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ebA3818 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
eba03021
]
ebA3818 (rpoB)
03400 DNA repair and recombination proteins [BR:
eba03400
]
ebA3818 (rpoB)
Enzymes [BR:
eba01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ebA3818 (rpoB)
Transcription machinery [BR:
eba03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ebA3818 (rpoB)
DNA repair and recombination proteins [BR:
eba03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ebA3818 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
BSH_YknX
Motif
Other DBs
NCBI-ProteinID:
CAI08275
UniProt:
Q5P339
LinkDB
All DBs
Position
2247844..2251977
Genome browser
AA seq
1377 aa
AA seq
DB search
MAYSYTEKKRIRKSFAKRAAVLNVPFLLATQIESFASFLQADTPPPSRLNHGLQAAFTSI
FPISSHSGNARLEFVQYMLGEPAFDVKECQQRGLTFASPLRARVRLVILDRDAPKETVKE
VKEQEVYMGEIPLMTTTGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSARI
IPYRGSWLDFEFDPKDALYFRVDRRRKMPATILLRAIGMGPEEILATFHDFDAFHLRGNE
AAFELVPDRLRGDVAKFDITDGAGNVIVARDKRITAKHIRELDQAGVKMISVPDEFLLGR
IIARNIVDAETGEIVARANDEITEDLLDKLRDAGVKDLETLYVNDLDRGAYISQTLRIDE
TADQWAARVAIYRMMRPGEPPTEDAVEALFQGLFYSEERYDLSSVGRMKFNRRAYPEKIE
DKAPSWLKRFYETVGPRGEEGPATLSNEDILAVIGVLVELRNGRGEIDDIDHLGNRRVRS
VGELAENQFRAGLVRVERAVKERLSQAESDNLMPHDLINAKPISAAIKEFFGSSQLSQFM
DQTNPLSEITHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSL
AVYAQTNRHGFLETPYRKVVDSKVTDQIDFLSAIEEGQYVIAQANAEIDADGMLEGDLVS
CRHKGEFALSTADQVQYMDVAPGQIVSVAASLIPFLEHDDANRALMGANMQRQAVPCLRP
EKPLVGTGIERTVAVDSGTAVQAMRGGIVDYVDANRIVVRVNDDETLAGEVGVDIYNMIK
YTRSNQNTNINQRPVVKVGDHIGKGDVIADGASTDLGELALGQNMLVAFMPWNGYNFEDS
ILISERVVAEDRFTSIHIEELTVVARDTKLGPEEITRDIASLGEAQLSRLDESGIVYIGA
EVDAGDVLVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVSSGMNGTVIDVQVFT
REGIERDKRAQSIIDDMLRSFKTDLADQMRIVERDAFARIRRLIVGQKANGGPKKLLKGT
AITGEYLDSLEFYHWFDIRMADEELAAQLEAIREGLEKTRKDFDQAFEIKKKKLTQGDEL
PPGVQKMVKVYLAVKRRLQPGDKMAGRHGNKGVVSRIVPIEDMPHMADGTPVDIVLNPLG
VPSRMNIGQILETHLGWASKALGNKIGTMLRANAAAAEVRELLEHIYNDNGRPEDMGSLK
DDEVIELASNLSKGVPFATPVFDGAKEEEIEAMFELAGLQPGGQVTLYDGRTGDAFDRQV
TVGYKHVLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAY
TLQEMLTVKSDDVTGRTKVYESIVKGEHKIDAGMPESFNVLVKEIRSLAIDIDLDTY
NT seq
4134 nt
NT seq
+upstream
nt +downstream
nt
atggcgtattcctacaccgaaaagaaacgtatccgcaagagcttcgccaagcgcgcggca
gtgttgaacgtacctttcctgctcgcaacccagatcgaatcgttcgcctctttcctgcag
gccgatacgcctcctccgtcgcgcctgaaccatggcctgcaggccgcgttcacgtcgatc
tttccgatttccagccacagcggcaacgcgcggctggaattcgtacagtacatgctcggc
gaacctgctttcgacgtcaaggagtgccagcagcgcggactgacttttgcgtcgccgttg
cgcgcgcgcgtgcggctggtgattctcgatcgcgatgcgccgaaggagacggtcaaggag
gtcaaggagcaggaagtgtacatgggcgagatcccgctcatgaccaccaccgggtcgttc
gtcatcaacgggacggagcgtgtcatcgtctcgcagctgcaccgctcgcccggcgtgttc
ttcgagcacgaccgcggcaagacgcactcgtcgggcaagctgctgttctcggcgcgcatc
atcccgtatcgcggttcgtggctcgatttcgagttcgatccgaaggatgcgctgtacttc
cgcgtcgaccgccgccgcaagatgccggcgacgatcctgctgcgcgcgatcggcatgggg
ccggaggaaatcctcgcgaccttccatgacttcgacgcgttccacctcaggggcaacgag
gcggcgttcgaactggtgcccgatcgcctgcgcggcgatgtggcgaagttcgacatcacc
gacggcgccggcaacgtgatcgtcgcgcgcgacaagcgcatcactgccaagcacatccgc
gagctcgaccaggcgggcgtgaagatgatttccgttcccgacgagttcctgctcgggcgc
atcatcgcgcgcaacatcgtcgacgccgaaaccggcgaaatcgtcgcgcgggcgaacgac
gagatcaccgaagacttgctcgacaagctgcgcgacgcgggcgtcaaggacctcgagacg
ctctacgtcaacgatctcgatcgcggggcgtacatctcccagacgctgcgcatcgacgag
accgctgaccagtgggcggcgcgcgtcgcgatctatcgcatgatgcgccccggcgaaccg
ccgacggaagacgccgtcgaagccctgttccagggtctgttctattccgaggaacgttac
gacctgtcgtccgtgggccgcatgaagttcaatcgccgcgcctatcccgagaagatcgag
gacaaagcgccgagctggctgaagcgcttctacgagaccgtcggtccgcgtggcgaggaa
gggccggcgacgctgtcgaacgaagacattctcgccgtcatcggcgtgctcgtcgaattg
cgcaacggccgcggcgagatcgacgacatcgaccaccttggtaaccgtcgtgtgcgttcg
gtcggcgagcttgcggaaaaccagttccgcgccggtctggtgcgcgtcgagcgcgccgtc
aaggagcggttgagccaggccgagtccgacaacctgatgccgcacgacctgatcaacgcg
aagccgatctcggccgcgatcaaggagttcttcggctcgagccagctgtcgcagttcatg
gaccagaccaacccgttgtccgagatcacgcacaagcgtcgcgtctcggccctcggcccg
ggcggcctgacgcgcgaacgcgctggcttcgaagtccgcgacgtgcatccgacgcactac
ggccgcgtgtgcccgatcgagacgccggaaggtccgaacatcggcctgatcaactcgctc
gccgtgtatgcgcagacgaaccgccacggttttctcgaaacgccgtatcgcaaggtcgtc
gatagcaaagtcaccgaccagatcgacttcctgtcggcgatcgaggaaggccagtacgtg
atcgcgcaggcgaacgccgagatcgacgccgacggcatgctggaaggcgacctcgtgtcg
tgccgccacaaaggtgagttcgcgctgtcgactgccgaccaggtgcagtacatggacgtc
gcgccgggccagatcgtgtcggtcgcggcatccctgattccgttcctcgagcacgacgac
gcgaaccgcgcgttgatgggcgcaaacatgcagcggcaggcggtgccttgcctgcgaccc
gagaagccgctcgtcggcaccggcatcgagcgcaccgtcgcggtcgactccggtactgcg
gtgcaggcgatgcgcggtggcatcgttgactatgtcgatgcgaaccggatcgtggtgcgg
gtcaacgacgacgaaactctcgcgggcgaagtcggcgtcgacatctacaacatgatcaag
tacacgcgctcgaaccagaacacgaacatcaatcagcgtccagtggtcaaggtcggcgat
cacatcggcaagggcgacgtcatcgccgacggcgcgtcgacggacctcggcgagctcgcg
ctgggccagaacatgctggtcgcgttcatgccgtggaacggctacaacttcgaggactcg
atcctgatctcggagcgcgtcgtcgccgaagaccgcttcacgtcgatccatatcgaggag
ctcacggtcgtcgcgcgcgacaccaagctcgggcccgaggaaatcactcgcgacatcgcg
tccctcggcgaagcgcagctgtcgcgcctcgacgaatcgggcatcgtctatatcggcgcg
gaagtcgacgccggcgacgtgctcgtcggcaaggtcacgccgaaaggcgagacccagctg
acgccggaagaaaagctgctgcgcgcgatcttcggcgagaaggcctccgacgtgaaggac
acgtcgctgcgcgtgtcgtcgggcatgaacggcacggtcatcgacgtgcaggtgttcacg
cgtgaagggatcgaacgcgacaagcgcgcgcagagcatcatcgacgacatgctgcgcagc
ttcaagaccgacctcgccgaccagatgcgcatcgtcgagcgcgacgcgttcgcgcggatc
cgccgcctgatcgtcggccagaaagccaacggcgggccgaagaagctcctcaaggggacg
gcgatcaccggcgagtatctcgattcgctcgagttctaccactggttcgacatccgcatg
gccgacgaggagctcgcggcgcagctcgaagcgatccgcgagggtctggagaagacgcgc
aaggacttcgaccaggcgttcgagatcaagaaaaagaagctcacgcagggcgacgaactg
ccgccgggcgtgcagaagatggtcaaggtctatctggcggtgaagcgccgcctgcagccg
ggcgacaagatggccggtcggcacgggaacaagggcgtggtgtcgcggatcgtaccgatc
gaggacatgccgcacatggcggacggcacgccggtcgacatcgtgctcaatccgctcggc
gtgccatcgcggatgaacatcggccagatcctcgaaacccatctgggctgggcatcgaaa
gcgctcggcaacaagatcggtacgatgctgcgggcgaacgcagctgccgcggaggtgcgc
gagctactcgagcacatctacaacgacaacggccgcccggaggacatggggtcgctgaag
gacgatgaagtcatcgagctggcctcgaacctctcgaaaggcgtgccgttcgcgacgccg
gtgttcgacggagccaaggaagaagagatcgaggcgatgttcgagctcgccggtctgcag
ccaggtggccaggtcacgctgtatgacgggcgtaccggcgatgcgttcgaccgccaggtg
acggtcggctacaagcacgtgttgaagctgcatcaccttgtcgacgacaagatgcacgcg
cgctcgaccgggccgtactcgctcgtcacacagcagccgctcggcggcaaggcgcagttc
ggtggccagcggttcggggaaatggaagtgtgggcgctcgaagcgtacggcgccgcctac
acgctgcaggaaatgctgactgtgaagtccgacgacgtcaccggccggacgaaggtgtac
gaaagcatcgtcaagggcgaacacaagatcgatgcgggcatgcccgaatccttcaacgtg
ctggtgaaggaaatccgctcgctcgcgatcgacatcgatctggacacgtactga
DBGET
integrated database retrieval system
