Aromatoleum aromaticum: ebA4074
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Entry
ebA4074 CDS
T00222
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase protein
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
eba
Aromatoleum aromaticum
Brite
KEGG Orthology (KO) [BR:
eba00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eba03019
]
ebA4074 (hrpA)
Enzymes [BR:
eba01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
ebA4074 (hrpA)
Messenger RNA biogenesis [BR:
eba03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
ebA4074 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
WHD_HA2
AAA_22
AAA_30
T2SSE
NACHT
nSTAND_NTPase5
nSTAND3
AAA_23
AAA_25
TsaE
PhoH
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
CAI08438
UniProt:
Q5P2M6
LinkDB
All DBs
Position
2404015..2408256
Genome browser
AA seq
1413 aa
AA seq
DB search
MALPRSGIIPPRHRKARPRRLVPNDFPFSGVGRASSPAIPILKTIDTLSARTGERQSFAD
CLSVDRPRLQRLARDLGRAQGARRERAQADLEALLTRSRATFAERKAALPHPDFPPELPV
TQKRAEIAAAIAAHQVVIVSGETGSGKTTQLPKICLALGRGAAGLIGHTQPRRLAARATA
TRIAQELKSELGQAVGYKIRFTDRIGAATHVKLMTDGILLAETQGDPLLAAYDTLIIDEA
HERSLNIDFLLGYLKTLLPRRPDLKVIVTSATLDAERFARHFGAPGKPAPVIEVSGRLYP
IEMRYRPVEDDEPSSEERRSGGRKEKGRDLYDAIIDAVDEAHRSGLGDTLVFLPGEREIR
EAAEALRKAHHAGSTEILPLFARQSAQEQARVFSAGRGRRVVLATNVAETSLTVPGIRYV
VDTGLARVKRYSHRNKVEQLQIEKIAQSAAKQRAGRCGRVMDGVCFRLYDEADFDKRAAH
TDPEILRSSLAGVILRMKSLRLGEVEDFPFLDAPLPRMIADGYQLLAELGALDEGGDARQ
LTPIGRELAKLPLDPKIGRMILAARDRECLAEVLVIAAALSVQDPRERAPESPGAADQAH
AKFRGGEQDQRSEFLWYWNLWKAWDEVLRHESGSKQKAWAKRHHLSYMRLREWRDVHSQL
VTLCAEHGWKENQQPAQYEPLHKALLTGLLGHVGSKIEDASGPQAGSYLGARGIRFWPHP
GSALAKKAGKWIVCAELVETSRLFGRCLAKIEPEWLEEVGSHLVKRQVFEPHWSKASGAV
RAWERGTLHGLVLYPRRGVGYRDIDPELCRELFIREGLVQGEIAEGPARGMAFLQHNRRL
VAEIERLEHKSRRPDVLVDEQLIFAFYDAKLPPDVMDVASFERWRKTAEQADPKLLYLTR
DQLMRHEAEGITTDRFPSTFDVLGQKLKLTYLHQPGEPDDGVTLTVPLAMLNQVPANRCE
WLVPGLLGEKAAALLRTVPQRHRHRLQPIADSAAAFVEQFEAGEFNVDDGLLRALQRFVE
ERVSLKLPMESFRAENLNPHFFMNFRVIDEHGRVLGQSRNLAELRTRLRDQVAERFRAAR
IALPENEAAKQSDALPPGTAPSASRVARAKTVGGAGQAERQSPSSPASPAMGGFTAWTFG
PLPELLEVKVAGRDVIGYPALHDDGDSVSLRPYDTPEEAAKIHRKGLARLFTLVLKDQVR
AIEKLPGLRDLALAFIPFGTEAELKAQLVAATLARTCLLDPLPSDAASFERRCAEGKPRV
TLVAQEFMRLAATLIAEHAALQKRLTGLRAFPEVAADIQAHVRELLPKNFLLAFPWGRLA
EFSRYLKAAGVRLDKLRNDPARDARLAADWRSLAQPFERELLAKRKAGVIDPALEEFRWL
LEELRVGLFAQELKTPMPMSVKRLQKIWDARPR
NT seq
4242 nt
NT seq
+upstream
nt +downstream
nt
gtggccctgccgcgttctggcataattccgcctcgccaccggaaagcccggcctcgccgg
ctggtcccgaacgatttccctttttccggcgtcggacgcgcttcttctccggcgataccg
atattgaaaaccatagatacgctttccgcccgtaccggcgaacggcagtccttcgccgat
tgcctgagcgtcgatcgcccgcgattgcagcgcctcgcccgcgacctcgggcgagcacag
ggcgcccggcgggagcgcgcacaagctgacctcgaggcgttgctgacgcgctcgcgtgcg
actttcgccgaacgaaaggcggcgctgccgcatcctgactttccgccggagctgccggtc
acgcagaagcgcgcggagatcgccgccgccattgccgcacatcaggtcgtcatcgtcagc
ggcgaaaccggttcgggcaagacgacccagctgccgaaaatctgcctcgcgctcggccgc
ggcgccgcggggctcatcggccacacgcagccgcgtcgcctcgccgcgcgcgcgaccgcg
acgcgcatcgcccaggagctgaaatccgagctgggccaggcggtcggttacaagatccgt
ttcaccgaccgcatcggcgcggcgacccacgtcaagctgatgaccgacggcatcctgctc
gccgagactcagggcgacccgctgctcgccgcgtacgacacgctgatcatcgacgaggcc
cacgaacgaagcctcaacatcgacttcctgctcggctacctgaagacgctgctgccccgc
cgtcccgacctgaaagtgatcgtcacatcggcgaccctcgacgcggagcgcttcgcgcgc
catttcggcgccccgggaaagccggcgccggtgatcgaggtgtcgggacggctctatccg
atcgagatgcgctaccggccggtcgaggacgacgagccgtcgagcgaagaacgccgcagt
ggggggcggaaggagaagggacgcgacctgtacgacgcgatcatcgacgcggtcgacgag
gcgcaccgcagcggccttggcgacacgctggtgttcctgccgggcgagcgcgaaatccgc
gaggccgccgaggcgttgcgcaaggcgcatcacgccggcagcaccgagatcctgccgctc
ttcgcgcgccagtcggcgcaggagcaggcgcgcgtgttctccgcgggccgggggcggcgc
gtcgtgctcgcgacgaacgtcgccgagacgtcgctgaccgttccgggcatccgctacgtc
gtcgataccggtctggcgcgcgtcaagcgctactcgcaccgcaacaaggtcgagcagctg
cagatcgagaagatcgcccagtcggcggcgaagcagcgcgccgggcgctgcggccgggtc
atggacggggtctgcttccggctctacgacgaggccgatttcgacaagcgcgcggcgcac
accgacccggagatcctgcgctcgtcgctcgccggcgtgatcctgcgcatgaagtcgctg
cgcctcggcgaagtcgaggacttcccgttcctcgatgcgccgctgccgcgcatgatcgcc
gacggctaccagctgctcgccgaactcggtgcgctcgacgaaggaggcgacgcgcggcag
ctcacgccgatcggccgcgagctcgcgaagctgccgctcgacccgaagatcggccgcatg
atcctcgccgcgcgcgatcgcgaatgtctggccgaagtgctcgtgatcgccgccgcgctg
tcggtgcaggatccgcgcgagcgtgcgccggagagcccgggtgcggccgaccaggcgcat
gcgaagttccgcggcggcgaacaggaccagcgctcggaattcctgtggtactggaacctc
tggaaagcttgggacgaagtgctgcggcacgaatccggatccaagcagaaagcgtgggcg
aagcgccatcacctgtcctacatgcggctgcgcgaatggcgcgacgtgcatagccagctg
gtgacgctgtgcgccgagcacggctggaaggaaaaccagcagccggcgcagtacgaaccg
ctccacaaggcgctgctgaccggcctgctcgggcacgtcggcagcaagatcgaggacgcg
agcggcccgcaggcgggcagctatctcggcgcgcgcggcatccgcttctggccgcatccc
gggtcggcgctggcgaagaaggccggcaagtggatcgtctgcgccgagctcgtcgagacc
tcgaggctcttcggccgttgcctcgcgaagatcgaacccgaatggctggaagaagtcggc
agtcatctcgtcaagcgtcaggttttcgaacctcactggtcgaaggcgtcgggagcggtg
cgggcgtgggagcgcggcacgctgcacgggctcgtgctctacccgcgacgcggagtcggc
taccgcgacatcgaccccgagctgtgccgcgaactcttcatccgcgaaggtctcgtgcag
ggcgaaatcgccgaggggccggcgcgcggcatggctttcctgcagcacaacaggcggctc
gtcgccgagatcgaacggctcgaacacaagtcgcggcggccggacgtgctcgtcgacgag
cagctgatctttgccttctacgacgcgaaactgccgcccgacgtcatggatgtcgcgagc
ttcgagcgctggcgcaagacggccgagcaagcggatccgaagctgctgtacctgacgcgc
gaccagttgatgcgccacgaggccgaaggcatcacgacggaccgcttcccgtcgaccttc
gacgtgctcggccagaagctgaagctgacttatcttcaccagcccggcgagcccgacgac
ggcgtgacgctgacagtgccgctcgcgatgctgaaccaggtgccggcgaatcgctgcgag
tggctcgtgcccggcctgctcggggaaaaggcggccgcgctgctgcgcaccgtgccgcag
cggcatcggcaccggctgcagccaattgccgacagcgccgcggcgttcgtcgaacagttc
gaggcgggggagttcaatgtcgatgacggtttgttgcgcgcgctgcagcgcttcgtcgag
gagcgcgtgtcgctgaagctgccgatggagtcgttccgcgcggaaaacctcaatccgcat
ttcttcatgaacttccgcgtcatcgacgagcatgggcgcgtgctcggccagtcgcgcaac
ctcgcggaattgcgcacgaggctgcgcgaccaggtcgccgagcgcttccgcgcggcgcgc
atcgcattgccggaaaacgaagcggcgaagcagtccgacgctttgcctcctggaacagcg
ccttccgcgagccgcgtcgcgcgtgcaaaaaccgtcggcggcgcggggcaggcggagcgc
cagtcaccgtcatctcccgcctccccggctatgggaggcttcacggcctggactttcggc
ccgctgcccgaactgctcgaagtgaaagtcgccgggcgtgacgtcatcggctacccggcg
ctgcacgatgacggcgacagcgtttcgctgcgcccttacgacacgcccgaggaagcggcg
aaaatccatcgcaaggggctcgcccgcctcttcacgctcgtgctgaaggaccaggtcagg
gcgatcgagaagctgcccggcctgcgcgacctggcgctcgcgttcatcccgttcggtacc
gaagccgaactcaaggcgcaactggtcgccgcaaccctcgcgcgcacctgcctgctcgat
ccgctgccgagcgacgccgcaagcttcgagcggcgctgcgcggagggcaagcctcgcgtc
acgctcgtcgcgcaggaattcatgcgtctcgccgccacgttgatcgccgaacatgcggca
ctgcagaaacggctgaccgggttgcgcgcgttccccgaggtcgccgccgatatccaggcg
cacgtgcgcgaactgctgccgaagaacttcctgctcgcgttcccgtgggggcgtctagcg
gaattttcgcgctacctgaaagcggccggcgtgcggctcgacaagctgcgcaacgatccg
gcgcgcgacgcccggctcgccgccgactggcgttcgctcgcgcagccattcgagcgcgaa
ctgctcgcaaaacgcaaggcgggtgtcatcgacccggcgctcgaggaattccgctggctg
ctcgaagagctgcgcgtcgggctgttcgcccaggaactgaagacgccgatgccgatgtcg
gtcaagcggctgcagaagatctgggatgcgcgaccgcgttga
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