Aromatoleum aromaticum: ebA4502
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Entry
ebA4502 CDS
T00222
Name
(GenBank) ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
eba
Aromatoleum aromaticum
Pathway
eba03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eba00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ebA4502
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eba03019
]
ebA4502
Enzymes [BR:
eba01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ebA4502
Messenger RNA biogenesis [BR:
eba03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ebA4502
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Utp25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
CAI08679
UniProt:
Q5P1Y5
LinkDB
All DBs
Position
complement(2671502..2672977)
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AA seq
491 aa
AA seq
DB search
MSFADLGLIPELLRAVAESGYTTPTPIQQQAIPVVLSGRDVMGGAQTGTGKTAGFTLPLL
QRLARHASTSTSPARHPVRALILAPTRELAMQVFESVKTYSKYVPLRSTCIYGGVDMKPQ
IQDLRNGIEIVVATPGRLLDHVQQKTIQLGQVEMLVLDEADRMLDMGFIPDIRRILDLLP
AARQSLLFSATFSDEIKKLADQMLKEPQLIEVARRNMVSETITHRVHPVSAGLKRNLLAH
LLRHEPDTQALVFVATKLACSRLAHFLERHGIAADAIHGDKGQAQRTDTLEAFKSGKLRV
LVATDVAARGLDIDDLPSVINFELPHTAEDYVHRIGRTGRAGRQGNAVSLVSAEERHHLA
EIEKLIKLQIPQEIVPGFDPEPDFFETGSRSRHGRRTAAASAPEPAKETGQKTTPASRPA
RPASAARSGEARRRPGRSTIAADGFDYTKPYEPAASPADPNRLADQAAGKIGSSRRTQRP
IAVLLGGLGRK
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atgagtttcgccgacctcggactgatccccgagttgctacgtgcagtagccgaatccggc
tacaccacccccaccccgatccagcagcaggcgatcccggtggtcctgtccggccgcgac
gtcatgggcggcgcccagaccggcaccggcaagaccgccggcttcacgctgccgctgctg
cagcgcctcgcgcgccacgccagcacttcgacgagtccggcgcgacacccggtgcgggcg
ctgatcctcgcgccgacgcgcgaactcgcgatgcaggtcttcgaatccgtcaagacctac
agcaagtacgtcccgctgcgcagcacgtgcatctatggcggcgtcgacatgaagccgcag
atccaggatttgcgcaacggcatcgagatcgtcgtcgcgacgccgggacggctcctcgac
cacgtccagcagaaaaccatccagctcggccaggtcgagatgctcgtgctcgacgaagcc
gaccgcatgctcgacatggggttcatccccgacatccgccgcatcctcgacctgctgccc
gccgcgcgccagagcctgttgttctcggcgacattctcggacgagatcaagaagctcgcc
gaccagatgctgaaggaaccgcagttgatcgaagtcgcgcgccgcaacatggtgtccgag
acgatcacccaccgcgtgcacccggtttcagcgggcctcaagcgcaacctgctcgcgcac
ctgttgcgccatgagccggacacgcaggcgctggtgttcgtcgcaacgaagctcgcgtgc
agccggctcgcgcatttcctcgagcgccacggcatcgccgccgacgcgatccacggcgac
aaaggccaggcgcagcgcaccgacacgctcgaagccttcaagtccggcaagctgcgcgtg
ctcgtcgcgaccgacgtcgcggcgcgcgggctcgacatcgacgacctgccgtcggtgatc
aatttcgaacttccgcataccgccgaagactacgtgcaccgcatcggccgcaccgggcgt
gccgggcgccagggcaacgcggtgtcgctggtgagcgccgaagagagacaccatcttgcg
gaaatcgaaaaactcatcaagctgcagattccgcaggaaatcgtgccgggcttcgacccc
gagccggattttttcgaaaccggcagccgcagccggcatggccgccgcacggccgccgcc
agcgctcccgaaccggcgaaggaaaccggccagaaaacgactcctgcgtcgcgccctgcc
cggcccgcctcggccgcgcggagcggcgaagcccggcggcgccccggacgatcgacgatc
gccgcagacgggttcgactacaccaagccatacgaaccggcagcttcgccagccgatccg
aatcggctggcggatcaggccgcaggaaagatcggttcgtcgcgtcgcacgcagcgcccg
atcgcggtgctgctcggcggcctcggccggaaatag
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