Aromatoleum aromaticum: ebA4628
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Entry
ebA4628 CDS
T00222
Symbol
cho
Name
(GenBank) Excinuclease Cho, similar to DNA polymerase III epsilon subunit family
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
eba
Aromatoleum aromaticum
Pathway
eba03030
DNA replication
eba03430
Mismatch repair
eba03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
eba00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ebA4628 (cho)
03430 Mismatch repair
ebA4628 (cho)
03440 Homologous recombination
ebA4628 (cho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
eba03032
]
ebA4628 (cho)
03400 DNA repair and recombination proteins [BR:
eba03400
]
ebA4628 (cho)
Enzymes [BR:
eba01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
ebA4628 (cho)
DNA replication proteins [BR:
eba03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
ebA4628 (cho)
DNA repair and recombination proteins [BR:
eba03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
ebA4628 (cho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
RNase_H_2
GIY-YIG
Motif
Other DBs
NCBI-ProteinID:
CAI08747
UniProt:
Q5P1R7
LinkDB
All DBs
Position
2737387..2738823
Genome browser
AA seq
478 aa
AA seq
DB search
MFDPPTCLIPDFLRPAGLAFVDIETTGTTASHDSITEIAIIEIGEDGVREWSSLVRPDSR
IPDYIERMTGISNHMVADAPTFAELAETVFDRLHERVFVAHNARFDHGFIRAAFRRLGVD
FRPKVLCTVRLSRRLYPQERRHNLDALIARHGLEVEAQHRALGDAQALWQFWQRVHRQFG
AAHLEPMLRELLGRPALPPHLDFDVIDAIPDAPGVYLFYGENDLPLYIGKSKHLRTRVLA
HFGADHRNSREMTLSQQVRRIDWIVTAGEIGALLKEAELIKSLLPTMNRKLRRSRELCSW
ELQPQADGGWRPELVHASDLDFGRQEHLYGLFRTRRAAIEALRKIAAEQQLCPPLLGLEK
PAGDGRCFTHQLHRCKGACAGGESRRLHGARLMLALHDLRVEHWPYPGPVGIREGDAMHV
VDSWCYLGTASSEVELHALLEAGRPSFELDAYRILVKAMRGAKVVDLRDIAAASRAPA
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
gtgttcgatccgcctacctgcctgatccccgactttctgcgccccgcaggccttgcgttc
gtcgacatcgaaaccaccggcaccaccgcgtcgcacgactcgatcaccgaaatcgcgatc
atcgagatcggcgaggacggggtgcgggagtggtcgagcctcgtgcggcccgacagccgc
atccccgattacatcgaaaggatgaccggcatctcgaaccacatggtcgcggacgcgccg
actttcgccgaactcgccgaaacggtcttcgaccggctgcatgagcgggttttcgtcgcg
cacaacgcgcgcttcgaccacggcttcatccgcgcggcgttccggcgactcggcgtcgat
ttccggccgaaagtgctgtgcaccgtgcggctgtcgcgccgcctctatccgcaggagcgg
cgacacaacctcgatgcgctgatcgcgcgacacgggctggaagtcgaagcgcagcatcgg
gcgctcggcgatgcccaggcactgtggcaattctggcagcgtgtgcatcggcagttcggc
gcagcgcacctcgagccgatgctgcgcgaactcctcggccgtccggcgctgccgccgcat
ctcgacttcgacgtgatcgacgcgatacccgatgcgccgggcgtctatcttttctacggc
gaaaacgacctgccgctctacatcggcaaaagcaagcacttgcgcacgcgtgtgctggcg
catttcggtgccgatcaccgcaacagccgggagatgacgctttcgcagcaggtgcgccgc
atcgactggatcgtcaccgcgggcgagatcggcgcgttgctgaaggaagccgaactgatc
aagtcgctgctgccgacgatgaaccgcaagctgcgccgcagccgcgaactgtgcagctgg
gagctccagccgcaagccgacggcggctggcggccggagctggtccatgcgagcgacctc
gatttcggccgccaggagcacctctacggcctgttccgcacgcgccgcgcggcgatcgag
gcgctgcgcaagatcgcggccgagcagcagctgtgtccgccgctgctcggcctggagaag
cccgcgggcgacggccgctgcttcacgcaccagctgcaccgctgcaagggcgcgtgcgca
gggggcgagtcgcgccgactgcacggcgcccgcctgatgctcgcgctgcacgacctgcgg
gtcgagcactggccctatccgggtccggtgggcatccgcgagggcgacgcaatgcacgtc
gtcgacagctggtgttacctcggaaccgcgtcgtcggaagtcgagttgcacgcgctcctc
gaggcggggcggccgagtttcgaactggacgcgtaccgcatcctcgtgaaggcgatgcgc
ggtgcgaaagtcgtcgatttgcgggacatcgcggccgcgtctcgtgccccggcctga
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