Aromatoleum aromaticum: ebA5441
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Entry
ebA5441 CDS
T00222
Symbol
rne
Name
(GenBank) ribonuclease E (RNase E)
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
eba
Aromatoleum aromaticum
Pathway
eba03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eba00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ebA5441 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eba03019
]
ebA5441 (rne)
03009 Ribosome biogenesis [BR:
eba03009
]
ebA5441 (rne)
Enzymes [BR:
eba01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
ebA5441 (rne)
Messenger RNA biogenesis [BR:
eba03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ebA5441 (rne)
Ribosome biogenesis [BR:
eba03009
]
Prokaryotic type
rRNA processing factors
ebA5441 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
zf-C2HC
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
CAI09219
UniProt:
Q5P0E5
LinkDB
All DBs
Position
complement(3244594..3247617)
Genome browser
AA seq
1007 aa
AA seq
DB search
MKRMLFNATQAEELRVAIVDGQKLIDLDIESAAKEQRKSNIYKAVITRIEPSLEAAFVDY
GGERHGFLPFKEISRTYFAPGADAGKVRIQEALKEGQELIVQVEKDERGNKGAALTTYIS
LAGRYLVLMPNNPRGGGVSRRVEGDERTELRDVMDQLEIPSGMSLIARTAAIGRNAEELQ
WDLNYLLQLWRAIDGAAQSQSGAFLIYQEGSLVIRAIRDYFQPEIGEILIDTDDVYEQAR
QFMSHVMPANVNRVKRYSDDVPLFSRFQIEHQIESAYSRQVTLPSGGAVVIDHTEALVSI
DVNSGRSTKGADIEETAFRTNLEAAEEIARQLRLRDLGGLIVIDFIDMESQKNQREVEGL
LRDALRHDRARVQTGKISRFGLLELSRQRLRPALAETSYIPCPRCNGTGHIRSTESSALH
ILRILEEEAMKENTGAVHLQVPVDVATFLLNEKRVDIAHIEVRHKIQLIIIPNRHLETPH
HEIIRLRHDQLNQEEVALASYQMVGKPAEIDLRLPSKEDTKPPRAEAVVKGISPAQPAPI
VEPKTEPVVAPGLAPKPAGLFQRLFGWLRSEKPAVTPQMAPEIAPKPESRPRAERSDTRR
GNNRNRRDGQQRTERGERDESTSAAQTARGPVRGERAERPERSERTERSDTGVDRGDRPA
RPERDNGGRTRQGRGQRTQPKQGEAAVVDNVVESPASTITIAPAPLAQMEAAAIVPAAED
GTPEKRRRRSRGRRDRRGTEQQAEVAASGDETGDTWAETAVPSIETAPETTQATSAEPVA
EVAAELPLAAAETTAPLPVAVTSPESIAVTAEAAPLPVSLHPATSIEAESPAEAEPVTLE
TAAEPVAEREAAIEPALEAKIAPEAAIEAAERARESLQAGLMEPLVHADTEPVQVSAGEE
LVEAEAEAEAEQAPTAAPAQNVVAPETEVAVTEAEVRTAESRLSSAPIDLGVNLAESGLV
MIETSRDKVQELASTADETPARPLGRRPRPAPVIVNEPLQQVETHSK
NT seq
3024 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgcatgcttttcaacgcgacgcaggccgaggaattgcgcgtcgcgatcgtggac
ggtcagaaactgatcgacctcgatatcgaatcggccgcgaaggagcaacgcaagagcaac
atctacaaggccgtcatcacccgcatcgaaccgagtcttgaagcggcattcgtcgattat
ggcggcgaacgacacggatttctgccgttcaaggaaatttcccgcacctattttgccccc
ggtgccgatgctggcaaggtccgaatccaggaggccctgaaggaagggcaggaactcatc
gtccaggtcgaaaaggacgaacggggcaacaagggcgcggcgctcaccacctacatctcg
ctggcgggccgttaccttgtcctgatgccgaacaacccgcgcggcggcggcgtatcgcgc
cgcgtcgagggtgacgagcgcaccgagctgcgtgacgtcatggatcagctcgagattcct
tccggcatgagcctgatcgcacgcacggccgcgatcgggcgcaatgccgaagagctgcag
tgggacctgaactacctgctgcaactgtggcgcgcgatcgatggcgcagcacagtcacaa
tccggcgcgttcctgatctaccaggaaggcagcctcgtgatccgcgcgatccgcgactat
ttccagcccgagatcggcgaaatcctgatcgacaccgacgacgtgtatgaacaggcgcgg
cagttcatgtcacacgtgatgccggccaacgtaaaccgcgtcaagcgctacagcgatgac
gtgccgctgttctcgcgcttccagatcgagcaccagatcgaatccgcgtactcgcgccag
gtcaccttgccaagcggcggagcagtcgtcatcgaccacaccgaggcgctggtatcgatc
gacgtgaactccgggcgctcgaccaaaggcgcggacatcgaggaaaccgcgtttcgaacc
aacctcgaagcggccgaggaaatcgcgcgccagctgcgtttgcgcgacctcggcggcctg
atcgtcatcgacttcatcgacatggagtcgcaaaagaaccagcgcgaagtcgaaggcctg
ctgcgggacgcgctgcggcacgatcgcgcgcgcgtccagactggcaagatcagccgcttc
ggcctgctcgaactgtcgcgccagcgcctgcgcccggcgcttgccgaaaccagctatatc
ccgtgcccgcgctgcaacggcaccggccacatccgcagcacggaatcgtcggcactgcac
atcctgcgtatcctggaagaggaggcgatgaaggaaaacaccggcgccgtgcatctgcag
gtcccggtcgacgtcgcgaccttcctgctcaacgagaagcgcgtggacatcgctcatatc
gaggttcgccacaagatccagctgatcatcatcccgaaccgccacctggaaacaccgcac
cacgaaatcattcgtctgcgccatgaccagctgaaccaggaagaggtcgcgctggcgagc
taccagatggtcggcaaacctgcggaaatcgatctgcggctgccgtcgaaggaggacacc
aagccgccccgcgcggaagcggtcgtgaagggaatctcgccggcccagcctgccccgatc
gtcgaaccgaaaaccgagccggtggtggcgcccggcctcgccccaaagcccgccggactg
ttccagcggctgttcggctggctgcgcagcgagaagcctgctgtgacgccgcaaatggct
ccggaaattgccccgaagccggagtcccgtccgcgggctgagcgcagcgatactcgccgc
ggcaacaatcgcaaccgtcgcgacggccagcaacgcaccgaacggggtgagcgtgacgag
tcgacatcggccgcccaaactgcaagagggccggtgcgcggcgaacgcgcggagcggccc
gaacggtccgagcgtacggaacgatccgacaccggcgtcgaccgcggcgacaggccggca
cgtccggagcgtgacaacggcgggcgtacacgccagggccgtggtcagcgcacccagccg
aagcagggtgaggccgcggtagtggacaacgtcgtggaatcgccggccagtactatcaca
atcgcccccgccccgctcgcacagatggaggctgccgccatcgttcccgcagccgaagac
ggcacccccgagaagcgccgtcgccgcagccgtggccgccgcgaccggcgcgggactgaa
cagcaggcagaagtcgctgcatcgggcgatgaaaccggagatacctgggccgaaacggct
gtgccgagcatcgaaacagcaccggaaacgacacaagccaccagtgccgagccggttgcc
gaagtggctgccgagctgcccttggctgccgcggaaactaccgccccgctgcctgtcgcc
gtcacctcgccggaatccattgcggtcaccgccgaagctgcaccgttgcctgtctcgttg
catccggcaaccagcatcgaggctgaatcgccggcggaagccgagccggtgacgctggaa
actgccgcagaaccggtcgccgaaagagaagctgcaattgaaccggcactcgaagcgaaa
attgcaccggaagcagcgatcgaagctgccgagcgtgcgcgcgaatcgctgcaggccggc
ctcatggaacctctcgtccatgcagacaccgaaccggtacaggtatccgcgggcgaggaa
ttggtcgaggccgaggccgaggccgaggccgagcaggcgcctactgcggctcccgcgcaa
aatgtcgtcgcgccggaaaccgaagtcgccgtgaccgaagccgaagtcaggacggccgag
tcccggttgtcctccgctccgatcgacctgggggtgaacctggccgaaagcggcctggtg
atgatcgagaccagccgcgacaaggtccaggagctggcgagcacggcggacgagacgcct
gcccggccgctgggacgccgcccgcgtccggcaccggtcatcgtcaacgaaccgctgcag
caggtcgaaacccactccaaataa
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