Aromatoleum aromaticum: ebA5738
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Entry
ebA5738 CDS
T00222
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
eba
Aromatoleum aromaticum
Pathway
eba03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eba00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ebA5738 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eba03019
]
ebA5738 (deaD)
03009 Ribosome biogenesis [BR:
eba03009
]
ebA5738 (deaD)
Enzymes [BR:
eba01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ebA5738 (deaD)
Messenger RNA biogenesis [BR:
eba03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ebA5738 (deaD)
Ribosome biogenesis [BR:
eba03009
]
Prokaryotic type
rRNA helicases
ebA5738 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_30
AAA_22
Cas3-like_C_2
BD-FAE
Motif
Other DBs
NCBI-ProteinID:
CAI09382
UniProt:
Q5NZY2
LinkDB
All DBs
Position
complement(3402825..3404801)
Genome browser
AA seq
658 aa
AA seq
DB search
MSQAAPAGFRYDALHSLSAPLLSTDRRLFPFRCPHQNPMTSPIESFAQLDLRAPLLDALS
EIGYETPSPIQAICIPHLLAGHDLLGEAQTGTGKTAAFALPLLDRLDLAVKNPQVLVLAP
TRELAIQVAEAFQRYAKNLPGFHVLPVYGGQSMVVQLRQLARGAHVIVGTPGRVMDHIER
KSLNLDSLTTLVLDEADEMLRMGFIDDVEWILQHTPAERQTALFSATMPDAIRRVAHRYL
REPREVKIKASTTTVSTTRQRYCQISVAHKLDALTRILEVEEDFDAAIIFVRTKTATVEL
ADKLEARGYSAAALNGDMTQQLRERVIEQLKGGQLDIVVATDVAARGLDVSRISHVINYD
IPYDTEAYVHRIGRTGRAGRTGSAILFVAPREMRMLKVIERATRQPIEALQLPSREAVAD
KRVAAFRQQVATVLESEDLAFFRDVVAGMESTHEAELHDIAAALAFLAQRERPLQLPESK
GPDIARLPEPRREPGAERAPRENRDKILERRREFSEGNLQRYRIEVGRNQQATPKDIVGA
IANEAGIESRYIGQINLYEDYSTVELPSALPHDVLDILRRVRVRQHQLNIRPLDAEEAKR
DAARVRPGAPRPGAAPRHAAHPGSKPAHPGRVGPRSFSSEKRTPSPGFKPGKKKPHDR
NT seq
1977 nt
NT seq
+upstream
nt +downstream
nt
ttgagccaagcggcaccggcaggatttcggtacgatgcgcttcattcgctaagcgccccg
ttactctcgacggatcggcgccttttccctttccgctgcccgcaccagaatcccatgact
tcccccatcgaaagcttcgcccaactcgatctccgtgcaccgctgctcgatgcgctgtcc
gaaatcggctatgaaacgccgtcgccgatccaggcgatatgcatcccgcatctgctcgcc
ggccacgacctgctcggggaagcgcagaccggtaccggcaagactgccgcgttcgcgctg
ccgctgctcgaccggctcgacctcgcagtcaaaaatccgcaggtgctcgtactcgcgccg
acccgcgaactcgcgatccaggtcgccgaggctttccagcgttacgcgaagaacctgccg
ggtttccacgtgctgccggtgtatggcggccagagcatggtcgtgcaactgcgccagctc
gcccgcggcgcacatgtcatcgtcggcaccccgggccgcgtcatggaccacatcgagcgc
aagagcctcaatctcgacagcctgacgacattggtgctcgacgaagccgacgagatgctg
cgcatggggttcatcgacgacgtcgaatggatcctgcagcacacgccggccgagcggcag
acggcgctgttctcggcgacgatgcccgacgcgatccgccgcgtcgcgcaccgttacctg
cgcgagccgcgcgaggtcaagatcaaggccagcacgacgacggtgtcgacgacgcgtcag
cgctactgccagatcagcgtcgcgcacaagctcgacgcgctgacgcgcatcctcgaagtc
gaggaggatttcgacgccgcgatcatcttcgtccgcaccaagaccgcgaccgtcgagctc
gccgacaagctcgaggcgcgcggctactcggccgccgcgctgaacggcgacatgacgcag
cagctgcgcgagcgcgtcatcgaacagctcaagggcggacagctcgacatcgtcgtcgcc
accgatgtcgctgcgcgcggcctcgacgtgtcgcgcatcagccacgtcatcaactacgac
atcccgtacgacaccgaagcgtatgtgcatcgcatcggacgcaccgggcgcgcgggtcgc
accggcagcgcgatcctgtttgtcgcgccgcgcgagatgcggatgctgaaagtcatcgag
cgcgcgacccgccagccgatcgaggcgctgcaactgccgtcgcgcgaggccgtcgcggac
aagcgggtcgccgcgttccgccagcaagtcgccaccgtgctcgaatccgaagacctcgca
tttttccgcgacgtcgtcgccggcatggaatcgacgcacgaagccgaactccacgacatc
gccgccgccctcgccttcctcgcgcagcgcgagcgcccgctgcagttgccggagtcgaaa
ggccccgacatcgcccgcctgcccgaaccgcggcgcgaaccaggcgccgagcgcgccccg
cgcgaaaaccgcgacaaaatactcgaacgccgacgcgagttttccgagggcaatctgcag
cgctaccgcatcgaagtcggccgcaaccagcaggcgacgccgaaggatatcgtcggcgcg
atcgccaacgaggccggcatcgaaagccgctatatcgggcagatcaacctctacgaggac
tacagcaccgtcgaactgccgagcgccctcccgcacgacgtgctcgacatcctgcgccgc
gtgcgcgtacgccagcaccagctgaacatccgcccgctcgacgcggaggaagcgaagcgc
gacgcggcccgcgtgcgcccgggagcccctcgtccgggcgcggcgccgcgtcacgcggct
caccctggaagcaaacccgctcatccgggaagggtcggcccgagatccttcagcagcgaa
aagcgcacgccgtcccccggcttcaaaccgggcaagaaaaaaccgcacgatcgctga
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