Aromatoleum aromaticum: ebA5815
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Entry
ebA5815 CDS
T00222
Symbol
recJ
Name
(GenBank) Exodeoxyribonuclease VII, single-stranded DNA-specific exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
eba
Aromatoleum aromaticum
Pathway
eba03410
Base excision repair
eba03430
Mismatch repair
eba03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
eba00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
ebA5815 (recJ)
03430 Mismatch repair
ebA5815 (recJ)
03440 Homologous recombination
ebA5815 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
eba03400
]
ebA5815 (recJ)
DNA repair and recombination proteins [BR:
eba03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
ebA5815 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
ebA5815 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ebA5815 (recJ)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Glyco_transf_4
Motif
Other DBs
NCBI-ProteinID:
CAI09425
UniProt:
Q5NZT9
LinkDB
All DBs
Position
complement(3452922..3454613)
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AA seq
563 aa
AA seq
DB search
MTRIQSRTVPPRVVQRLIDGGTHPLLARIYAARGISRREELDYGLKGLLPPGALRGTDEA
AQLLADAIEAGARMVIVADYDCDGATACAVGVRALRAFGADVGYLVPNRFEYGYGLTPAI
VELAARMEPDLLITVDNGIASVEGIAAARSYGMATLITDHHLPGDALPDADVIVNPNQPG
CDFPSKALAGVGVMFYTMLALRAELRSRGAFSGRQEPNLGELLDLVALGTVADVVKLDHN
NRILVAQGLARMRAGRMQPGVRALFAAAGREFERANTFDLGFALGPRLNAAGRLSDMSLG
IECLISDDMGRALNIAQDLDKLNRERRSIEQGMQEDALMRLAGFDPGQTASVSLFEPDWH
QGVIGIVAGRIKEKLHRPVVAFARGADGELKGSGRSIANVHLRDALDLVAKRHPDLILRF
GGHAMAAGLTIRETDYRRFGGAFEEIVQSLVGTADLTRTLETDGVLESGYMTLDSARLIE
QDIWGQGFAAPVFEDHFRVDNQRLLKDKHLKLQLSKNGVRFDAIRFNFAESAGASIHAAY
RLAPNEYNGVTNLQLMLEHFDTV
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atgacacgcatccagtcccgcaccgttccgccccgcgtcgtccagcgcctgatcgacggc
ggcacccatccgctgctcgcgcgcatttatgcggcgcgcggcatctcgcggcgcgaggag
ctcgactacggcctcaaggggctgctgccgccgggggcgctgcgcggcaccgatgaagcc
gcgcaactgctcgccgacgcgatcgaggccggcgcgcggatggtgatcgtcgccgactac
gactgcgacggcgccactgcctgcgccgtcggagttcgggccttgcgcgctttcggcgcc
gacgtcggctatctcgtgccgaaccgcttcgaatacggctacggcctcacgccggcgatc
gtcgaactggctgcgcggatggagcccgacctgctgatcaccgtcgacaacggcatcgcc
agtgtcgaagggatcgccgcggcgcgcagctacggcatggcgacgctcatcaccgaccat
cacctgcccggcgacgcgctccccgatgcggacgtcatcgtcaatccgaatcagccgggc
tgcgacttcccgagcaaggcgctcgccggcgtcggcgtgatgttctacacgatgctcgcg
ctgcgcgccgaactgcgcagccgcggcgcgttctccgggcggcaggaaccgaacctcggc
gagctgctcgacctcgtcgcgctcggcactgttgccgacgtcgtgaagctcgaccacaac
aaccgcatcctcgtcgcccaggggctcgcccgcatgcgagccgggcgcatgcagcccggc
gtccgcgcgctgttcgccgcggccggacgcgagttcgaacgcgcgaacactttcgacctc
ggtttcgcgctcggcccgcggctgaacgccgccggtcggctctcggacatgagcctgggc
attgaatgcctgatcagcgacgacatgggccgcgcgctgaacatcgcccaggatctcgac
aagttgaaccgcgagcggcgcagcatcgaacagggcatgcaggaagacgcgctgatgcgc
ctcgctggcttcgacccgggacaaacggcgtccgtgagcctgttcgagccggactggcac
cagggcgtcatcggcatcgtcgccggacgcatcaaggagaaactgcaccggcctgtcgtc
gcattcgcgcgcggcgcggacggcgaactgaagggatcggggcgctcgattgccaacgtg
cacctgcgcgacgcgctcgatctcgtcgccaagcggcatcccgacctgatcctgcgcttc
ggcggccacgcgatggcggcgggcctgacgatccgcgaaacggattaccggcgcttcggg
ggggcgttcgaggagatcgtccaatcactcgtcggcaccgccgacctgacgcgcacgctg
gaaaccgacggcgtgctcgaaagcggttacatgacgctcgattcagcgcgactgatcgaa
caggacatctggggacagggcttcgcggcgccggtgttcgaggaccatttccgcgtcgac
aaccagcgtctgctcaaggacaagcacctgaagctgcagttatcgaagaacggcgtgcgc
ttcgacgcgatccgcttcaacttcgccgagagcgcgggagcgagcatccatgctgcctac
cggctcgcgccgaacgaatacaacggcgtcaccaacctgcagttgatgctcgaacacttc
gacactgtatag
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