Aromatoleum aromaticum: ebA6555
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Entry
ebA6555 CDS
T00222
Symbol
mfd
Name
(GenBank) Transcription-repair coupling protein Mfd
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
eba
Aromatoleum aromaticum
Pathway
eba03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
eba00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ebA6555 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
eba03400
]
ebA6555 (mfd)
Enzymes [BR:
eba01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ebA6555 (mfd)
DNA repair and recombination proteins [BR:
eba03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ebA6555 (mfd)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
SNF2-rel_dom
AAA_30
UB2H
Cas3-like_C_2
AAA_22
ERCC3_RAD25_C
CTE_SPB4
DUF3638
AAA_16
Motif
Other DBs
NCBI-ProteinID:
CAI09872
UniProt:
Q5NYJ2
LinkDB
All DBs
Position
3885874..3889347
Genome browser
AA seq
1157 aa
AA seq
DB search
MSRPLDPLLPQLTALSLPKPGMRLDFPALAGSSDALAIAQLATRGPCLLLVTANPLDAQR
LQDEIAWFAPALRTHLLPDWETLPYDSFSPHQDLISERLSTLYAVSRGEADVVLVPASTA
LYRMAPPAFLAAYTFFLKQGAKLDVDGLRNQMAIAGYTHVTQVVSPGEFSVRGGLIDLFP
MGAALPFRIDLFDDEVESIKTFDPDTQRTVYPVPEIRMLPAREFPMDDAGRTRFRSRFRE
TFEGDPSRVSLYKDVSNGIAPAGIEYYLPLFFDQTATLFDYLPPDTAVVLHRDVPAAIDE
FWRDTRSRHDFLKGDRSRPVLPPEALFLGQESFFAALKDRPRIQVSAGEAAGEAPPPATP
LPDVSVERKATDPLHRLKELLAGDWARSGGRVLVLADAPGRRETISEFFGEYGLKPAPSA
DFAGFLVSGEPLALGVGPLANGFLLPGAQIAIVTESELYATTARTRVRHDARKAATMEGW
LRDLSELKPGDPVVHVSHGIGRYLGLIHMDLGEGRGSQMSEFLHLEYANGDKLYVPVSQL
HVITRYAGADPDAVDLHRLGSGQWEKAKKKAALQVRDTAAELLALYAQRAARPGHRFDFK
QHDLDAFAEGFGFETTPDQQAAIDAVVTDMKSGQPMDRLVCGDVGFGKTEVALRAAFVAV
ADGKQVVVLTPTTLLAEQHYQTFSDRFADFAIRIAELSRFKSAKEQTDSLKQLAEGKVDI
IIGTHRLLQKDVKFKRLGLVIIDEEHRFGVRQKEMLKTLRSEIDILTLTATPIPRTLGLA
LEGLREFSVIATAPSRRLAIKTFVHRHSKGIIREAVLREFKRGGQVYFLHNEVDTIDNVR
DELAELLPEARIVIGHGQLPERELERVMRTFTQQRANLLLCTTIIETGIDIPTANTIIIN
RADRFGLAQLHQLRGRVGRSHHQAYAYLLTDAHAKPSALAQKRLEAITMMEDLGSGFYLA
MHDLEIRGAGEVLGENQSGEIQQVGFSLYTEMLKRAVRDLQAGKEPDLTQPLDVVSEINL
HTPALLPNDYCPDVQERLTLYKRLANCESDDDLRNLQEELIDRFGELPPQTQALIETHRL
RLLVKPFGVAKLDASEAQISVQFGSDAPIDPAKVIFLIQKDRNTKMSGPDRLIRKASLPN
LKQRVQGVKELLEAVKA
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgtcccgaccgctcgaccccctgctgccccagctcacggcgctttcccttccgaaaccc
ggcatgcggctcgattttcccgcgctcgccggttcttccgacgcgctggcgatcgcccaa
ctcgcgacgcgcggcccgtgcctgctgctggtgaccgcgaacccgctcgacgcccagcgc
ctgcaggacgagatcgcgtggttcgcgcccgcgctgcgcacgcacctgctgcccgactgg
gaaacgttgccctacgacagcttttcgccacaccaggacctgatctcggaacgcctgtcg
acgctctacgcggtgagccgcggcgaggccgacgtcgtgctcgtgcccgcttcgaccgcg
ctgtaccgcatggcccccccggcctttctcgccgcctataccttcttcctgaagcagggc
gcaaagctcgacgtcgacggcctgcgcaaccagatggcgatcgccgggtacacacacgtg
acgcaggtcgtgagccccggcgagttctcggtgcgcggtggcctgatcgacctgttcccg
atgggcgcggcgctgccgtttcgcatcgatctcttcgacgacgaagtcgagagcatcaag
actttcgacccggacacgcagcgcaccgtctacccggtgcccgagatccgcatgctgccg
gcacgcgagttcccgatggacgacgccgggcgcacgcgctttcgcagccgctttcgcgaa
acgttcgaaggcgatccgtcgcgagtgtcgctgtacaaggacgtgtcgaacggcatcgcg
ccggccggcatcgagtactacctgcccctgttcttcgaccagacggcgacgctgttcgac
tacctgccgcccgacaccgcagtcgtactgcaccgcgacgtgccggcagcgatcgacgaa
ttctggcgggacacccgctcgcgccacgatttcctcaaaggcgaccgcagccgcccggtg
ctgccgcccgaagcgttgttcctcggccaggaaagcttcttcgccgccctgaaggaccgc
ccgcggatccaggtttcagccggcgaagccgcgggcgaggcgccgccgcccgccactccc
ctgcccgacgtttcagtcgaacgcaaggcgaccgacccgctgcatcgcctgaaggagctc
ctcgcgggcgactgggcgcgcagcggcggacgcgtcctcgtgctcgcagacgcccccggg
cggcgcgagacgatctccgagttcttcggcgaatacgggctcaaaccggcccccagcgcg
gacttcgccggcttcctcgtatccggcgagccgctcgcgctcggcgtcgggccgctcgcg
aacggcttcctgctgccgggcgcgcagatcgcgatcgttaccgagtccgagctttatgcg
accaccgcccgcacccgcgtgcgacacgacgcgcgcaaggccgcgacgatggaaggctgg
ctgcgcgacctgtccgaactcaagccgggcgacccggtcgtgcacgtgtcgcacggcatc
ggccgctacctcggcctgatccacatggatctgggcgaaggccgaggttcgcaaatgagc
gagttcctgcatctcgaatacgccaacggcgacaagctctacgtgccggtgtcgcagctg
cacgtcatcacccgctacgccggcgccgacccggatgccgtcgacctgcaccgcctcggc
tccggccagtgggaaaaggcgaaaaagaaagcggcgctgcaggtgcgcgacaccgccgcc
gagctcctcgcgctgtacgcgcagcgcgccgcccgccccggccaccgcttcgacttcaag
cagcatgacctcgacgccttcgccgaaggctttggtttcgagaccacgcccgaccagcag
gcggcgatcgacgccgtcgtcacggacatgaaatccggccagccgatggaccggctggta
tgcggcgacgtcggcttcggcaagaccgaagtcgctctgcgcgccgcgttcgtcgccgtc
gccgacggcaagcaggtcgtcgtgctgacgccgacgacgctgctcgccgaacagcactac
cagactttctccgaccgcttcgccgactttgcgatccgtatcgccgagctatcgcgcttc
aagagcgcgaaggagcagaccgactccctgaaacagctcgccgaaggcaaggtcgacatc
atcatcggcacgcaccgcctgctgcagaaggacgtcaagttcaagcgcctcgggctggtc
atcatcgacgaggaacaccgtttcggcgtgcgccagaaagaaatgctgaaaacattgcgc
agcgagatcgacatcctgacgctcaccgcgacgccgatcccccgcacgctcggcctcgcg
ctcgaaggcctgcgcgagttctcggtgatcgccaccgcgccttcgaggcggctcgcgatc
aagacgttcgtccaccgtcacagcaagggcatcatccgtgaagcggtgctgcgcgaattc
aagcgcggcgggcaagtgtatttcctgcacaacgaggtcgacacgatcgacaacgtgcgc
gacgaactcgccgaactgctgcccgaagcgcgcatcgtcatcggccacggccagctgccg
gagcgcgagctcgaacgcgtgatgcgcaccttcacgcagcagcgcgcgaacctgctgcta
tgcacgacgatcatcgaaaccggcatcgacatcccgaccgccaacacgatcatcatcaac
cgcgccgaccgcttcggcctcgcccagctgcaccagctgcgcgggcgcgtcggtcggagc
caccaccaggcctacgcctatctgctgaccgacgcccacgcgaagccgagcgcgctcgcg
cagaagcgcctcgaagcgatcacgatgatggaagacctcggctccggcttctatctcgcg
atgcacgatctcgagatccgcggcgcgggcgaagtgctcggcgaaaaccagtccggcgaa
atccagcaggtcggcttcagcctgtacaccgagatgctaaagcgcgccgtgcgcgacctg
caggccggcaaggagccggacctgacgcagccgctcgacgtcgtctccgagatcaacctc
cacacgccggcactgctgccgaacgactactgccctgacgtgcaggaacgcctgacgcta
tacaagcgcctcgcgaactgcgaatccgacgacgacctgcgcaatcttcaggaagaactc
atcgaccgcttcggcgagctgccgccgcagacccaggcgctgatcgagacccaccgcctg
cgcctgctcgtcaagccgttcggcgtcgcgaagctcgacgcgtctgaggcgcagatcagc
gtccagttcggctccgacgcgccgatcgacccggcaaaagtcatcttcctgatccagaaa
gaccgcaacaccaagatgtccggcccggatcgcctgatccgcaaggcgagcctgccgaat
ttgaagcagcgcgtgcagggggtgaaggaattgctggaggcggtgaaggcctga
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integrated database retrieval system
