Aromatoleum aromaticum: ebA6655
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Entry
ebA6655 CDS
T00222
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
eba
Aromatoleum aromaticum
Pathway
eba03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
eba00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
ebA6655
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
eba03400
]
ebA6655
Enzymes [BR:
eba01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
ebA6655
DNA repair and recombination proteins [BR:
eba03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
ebA6655
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
CAI09926
UniProt:
Q5NYD8
LinkDB
All DBs
Position
complement(3943642..3945870)
Genome browser
AA seq
742 aa
AA seq
DB search
MKRSESDKARAGDPLARYRAMRDFGTTPEPGGDTVAVKAGDGPTFTVQRHAARRLHYDFR
LELDGVLKSWAAPKGPSLDPSERRLAVETEDHPLDYGDFEGVIPARQYGAGEVVLWDRGR
WSTDNGQDWTHRMPQLVTALAALQLDDSWLDGEIVVNGDDGLPDFQALQNAFAQGASGRI
VYYLFDAPWLSGDELAALPLVERKHRLAAALAGGEGGASVYSEHFAGDVGAALEQACHLG
LEGLIGKRGDARYGSGRSCSWIKLKCRPRQEFVIGGYTEPGGAREGFGALLVGLYDDAGA
LNYAGKVGTGFDRETLERLARQLAALERKDSPFARKPRGAGQHWVRPALVAEVEYAGWTR
DNLLRQAAFAGLREDKPANTVQDEIPLSPQVAAEMEQPPSQAKSPRRQKKKPSTERGGPA
KPRASSESGEVRVAGIVITHPERVVWPDAGLTKADLARYYEDIAPWLLPHVASRPLSLLR
CPDGSEAECFFQRHMGQERPDGVESFIWEASSKDRRSYLYVTSLEGVIGMVQRGVVEFHT
WGSTMPRADRPDRITIDLDPGPELAWARVVEAAQLVRGLLGELGIASFVKTTGGKGLHVV
VPLRRGPQWADVKRFAKAVATHLARILPDRFTANMARNQRAGRIFVDYLRNDAGASAICA
YAARARPGAPVSTPLAWDELGPELKPGAFTVLTVADRLARLREDPWRDYAKQRFVLTGKM
WEALGETPPRKTPNQAEQRHSD
NT seq
2229 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgaagcgaatccgacaaggcccgcgcaggtgatccgctcgcgcgctaccgcgcg
atgcgcgacttcggcacgacgccggagccgggcggcgatacggttgcggtcaaggccgga
gacgggccgacgttcacggtccagcgtcacgccgcgcgccgcctgcattacgacttccgt
ctcgaactcgacggcgtgctcaagagctgggcggcgccgaaaggtccgagcctcgacccg
tccgagcgccggctcgccgtcgaaaccgaggaccatccgctcgactacggcgacttcgaa
ggcgtgattccagccagacagtacggcgcaggcgaagtcgttctgtgggatcgcgggcgc
tggtcgaccgacaacggccaggactggacgcaccgcatgccgcagcttgtgacggcgctg
gcggcgctgcaactcgacgacagctggctcgacggcgagatcgtcgtcaatggcgacgat
ggcttgccggatttccaggcgctgcagaacgcgttcgcacagggtgcgtccggccggatc
gtctattacctgttcgacgcaccgtggctgtccggagacgagctggcggccctgccgctc
gtcgagcgcaagcaccggcttgccgctgcgctcgccggcggggagggcggggcgagcgtg
tacagcgagcatttcgccggcgatgtcggggcggcgctcgagcaggcctgccacctcggg
ttggaagggctgatcggcaagcgcggcgacgcccgctacgggtcgggccgcagttgcagc
tggatcaagctgaaatgccggccgcggcaggagttcgttatcggcggctacaccgagccg
ggaggcgcccgggaaggcttcggcgcgctgctcgtcgggctgtacgacgacgccggggcc
ctgaattacgccggcaaggtcggcacgggcttcgatcgggagacgctcgagcggctcgcc
cgccagcttgccgcgctcgagcgcaaggactcgccgttcgcgcgcaagccgcgtggcgcg
ggccagcactgggtgcgtccggcgctcgtcgccgaagtcgaatacgctggctggacgcgt
gacaacctgctgcgccaggcggcattcgccggattgcgcgaggacaagccggccaatacg
gtgcaggacgagatcccgctaagtccgcaggtggcagcggaaatggaacaaccgccgtcg
caggcgaagtcgccgcgacggcagaagaaaaaaccgtccacggagcgtggcgggccggcg
aaaccgagggcgtcttcggagtcgggtgaagtgcgcgttgccggcatcgtcatcacgcac
ccggagcgcgtcgtctggccggatgcgggcctgacgaaggccgatctcgcccgctactat
gaggacatcgcgccgtggctgctgccgcacgtggcgagccgcccgctgagcctgctgcgc
tgtcccgatggcagcgaggcggagtgttttttccagcggcacatggggcaggagcggccg
gacggagtcgaaagcttcatctgggaagcgtcgtcgaaagaccgccgcagctatctgtac
gtgacgagtctcgaaggggtgatcggcatggtccagcgcggcgtcgtcgaattccatacc
tggggctcgacgatgccgcgcgcggaccggccggaccggatcacgatcgacctcgatccg
gggccggagctggcgtgggcgcgagtcgtcgaagcggcgcagctggtgcgcgggctgctc
ggggagctcgggatcgcgagtttcgtgaagacgaccggcggtaaaggcctgcacgtcgtc
gtgccgttgcgccgcggtccccagtgggccgacgtcaagcgcttcgcaaaagccgtcgcg
actcacctcgcacgcatcctgccggatcgcttcaccgccaacatggccaggaaccagcga
gctggcaggatcttcgtcgattacctgcgcaacgacgcgggggcgtcggcgatctgcgcg
tatgccgcacgggcgcgcccgggcgctccggtatcgactccgctcgcatgggacgagctc
ggaccggaactgaaacccggcgcgttcacggtcctcaccgttgcggaccggctcgcccgg
ctgcgcgaagatccttggcgcgattacgccaagcagcgcttcgtgctgaccggcaaaatg
tgggaggcactcggcgagacgccgccgcgcaagacaccgaaccaagcggagcaacgccac
tctgactga
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