Enterobacteriaceae bacterium bta3-1: F652_1249
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Entry
F652_1249 CDS
T09572
Symbol
hrpA
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
ebb
Enterobacteriaceae bacterium bta3-1
Brite
KEGG Orthology (KO) [BR:
ebb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ebb03019
]
F652_1249 (hrpA)
Enzymes [BR:
ebb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
F652_1249 (hrpA)
Messenger RNA biogenesis [BR:
ebb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
F652_1249 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_19
AAA_22
nSTAND3
NACHT
T2SSE
SLFN-g3_helicase
PhoH
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
AJQ99238
LinkDB
All DBs
Position
1368690..1372577
Genome browser
AA seq
1295 aa
AA seq
DB search
MTSPLSAIASQLDELMLRDKQRLMRRIQGAKKVKKAESQQAIADTLAVDLASALQRVESR
RAACPKITYPENLPVSQKKDEILAAIRDHQVVIVAGETGSGKTTQLPKICLELGRGVKGL
IGHTQPRRLAARSVGDRIAHELDTTLGGAVGYKVRFNDQVSDNTLVKLMTDGILLAEIQQ
DRMLMQYDTLIIDEAHERSLNIDFILGYLRQLLPKRPDLKVIITSATIDPQRFSRHFNNA
PIIEVSGRTYPVEVRYRPVVDDADDVDRDQLQAIFDAVDELGREGPGDILIFMSGEREIR
DTADALTKLNLPHTEILPLYARLSASEQNRVFQSHHGRRIVLATNVAETSLTVPGIKYVI
DPGTARISRYSFRTKVQRLPIEPISQASANQRKGRCGRVSEGICIRLYSEQDFLSRPEFT
DPEILRTNLASVILQMTSLGLGDIAAFPFVEAPDKRNILDGVRLLEELGAVSTSEQGHQQ
LTPLGRQLAQLPIDPRLARMVLEAQKHGAVREVMIITSGLSIQDPRERPSEKKQASDEKH
RRFADKESDFLSLVNLWDYLKEQQKELSSNQFRRQCKTDYLNYLRVREWQDIYTQLRQVV
KELRIPINSVPGDFRGIHCSLLSGLLSHIGQKDTEKQEYTGARNARFAIFPGSALFKKPP
KWTMVAELVETSRLWGRIAARIDPEWIEPLAQHLIKKSYSEPHWEKAQGAVMATEKVTLY
GLPIVAARKVNYGSIDPQVSRELFIRHALVEGDWQTRHAFFRANQRLRSEVEELEHKSRR
RDILVDDEALFSFYDQRIGHDVVSARHFDSWWKKASRTDPELLNFEKSMLIKDGAQGVSA
LDYPNFWHQGAFKLRLSYQFEPGTDADGVTVHIPLAILNQIEESGFDWQIPGIRRELVIA
LIKSLPKPIRRNFVPAPNYAEAFLGRATPLEMPLLESMERELRRMTGVTVSREEWQLDQV
PDHLRMTFRVIDDKKKTLAEGKSLEALKTQLKGQVQQTLSEVADDGLEQQGLHVWSFGSL
PQSYEQKRGGYSMKAFPALVDEKDSVAIRLFETEQEQQQAMWQGSRRLLLLNIPSPIKYL
HEKLPNKAKLGLYFNPYGKVLDLIDDCIACGIDSLIAKHGGPAWNEEGFTQLHEQVRAEL
NDEVVSIARQVEQILTTANGINKRLKGRVDMSLALALSDIKNQVGNLIYRGFVTATGASR
LPDVERYLHAIERRLEKVATDPHRDRAQMLKVEQVQQAWKQMLNKLPAQRAGEPEIKEIR
WMIEELRVSYFAQQLGTPYPISEKRIMQAIDQILA
NT seq
3888 nt
NT seq
+upstream
nt +downstream
nt
gtgacatccccgcttagcgccatcgcctcgcagcttgatgaactgatgctgcgcgataaa
cagcgtttgatgcgccgcatacagggcgccaaaaaggttaaaaaggccgaaagccaacag
gctatcgcggatacgctcgccgtcgatctggctagcgcgctgcaacgcgttgagtctcga
cgtgcggcctgtcctaaaattacctatccggaaaacttgccggttagccagaagaaagac
gaaatacttgccgcgatccgcgatcaccaagtggtgatcgttgccggtgaaacggggtcg
gggaaaaccactcagctgccgaaaatttgtctggagcttgggcgtggggtaaaaggcctg
atcggccatactcagccgcgtcgtttagccgctcgatcggtcggtgatcgtatcgctcat
gagcttgacacgacgctcggcggcgcggtgggctataaagttcgttttaacgatcaggtg
agtgacaacacgctggtcaaactgatgaccgacggtattttgctggctgaaattcagcaa
gatcgcatgttgatgcagtatgacactctgattatcgatgaggcgcatgaacgcagtctg
aatatcgattttattctcggctatctacgccagctactgcctaagcgtcccgatctgaaa
gtgattattacatcggcgaccattgaccctcagcgcttctcgcgtcatttcaataatgcg
cccattatcgaagtctctgggcgaacttatccggtcgaagtgcgttatcgcccggtggtg
gacgatgccgatgatgttgaccgcgaccagcttcaggcaatttttgatgccgtggatgaa
cttggacgagaaggaccgggcgatatcctgatctttatgagcggtgagcgtgaaattcgt
gataccgccgatgcgctcactaagttgaatttgccgcataccgaaattcttccgttatat
gctcgtttgtcagctagcgagcaaaaccgtgttttccaaagccaccatggtcgccgtatt
gtgctggcgaccaacgtggcagaaacttcgttgaccgttccgggaattaaatacgtcatc
gatccgggcacggcgcgaattagccgttatagcttcagaaccaaggttcaacgcctgccg
attgaaccgatttctcaggcttcggccaatcagcgtaaagggcgttgcggtcgcgtgtct
gaaggcatctgtatccgtctgtacagcgaacaggatttcctgtcacgtccagagtttacc
gaccctgagattctgcgaactaacttagcgtcggttattctacaaatgacgtcgcttgga
ctgggcgatattgccgcatttccgttcgtagaagcgcccgataagcgcaatattcttgac
ggtgtgcggcttcttgaggaactgggggcagttagcacctcagaacaaggacaccagcag
cttacaccgctgggacgccaactggcacagttgcctattgatcctcgcttggcgcgtatg
gtgttggaggcgcagaagcacggcgcagtacgcgaagtgatgatcattacgtcggggttg
tcgattcaggatcctcgtgagcgcccgagtgagaagaaacaggcatcggatgaaaaacat
cgtcgcttcgctgacaaagagagcgattttctatcgctggtgaatttgtgggattacctc
aaagagcagcaaaaagagctttcgtccaatcagttccgtcgtcaatgcaaaactgattat
ctcaactacttacgcgtacgtgaatggcaggatatctacactcagctgcgtcaggtggta
aaagagttacgtattcctatcaactccgtgccgggggatttccgtgggattcactgttct
ttgctgagtggtctgctatcgcatattggccagaaagacactgaaaagcaggagtatacc
ggcgctcgaaatgcgcgatttgccattttccctgggtcggcactatttaaaaaaccgcct
aaatggacgatggttgccgagctggtggagacgtctcgactatgggggcgcatcgcggcg
cgtatcgatcctgaatggatcgagccgttagcgcagcatctgattaagaaaagctacagc
gagccgcattgggaaaaagcgcagggtgcagtgatggcgacagaaaaagtcacgctgtat
ggcttgccgattgtggctgctcgtaaggttaactacggaagtatcgatccacaggtgagc
cgcgagctgtttatccgtcatgcgctggtggagggcgactggcagacgcgtcatgcgttc
ttccgcgccaatcagcggttacgttccgaagtggaagagctggagcacaaatcacgccgt
cgagatattttggtcgatgatgaagcgttgttcagtttctacgatcagcgtatcggtcat
gacgtggtttccgctcgccattttgatagttggtggaaaaaagccagccgcaccgatccc
gaactgctcaatttcgaaaaatcgatgctgattaaagatggtgcacagggtgtgagcgct
ctggattatcctaatttttggcatcaaggggcgttcaaactccgtttgtcctatcagttc
gaaccggggaccgacgctgacggtgtcaccgtacatatcccactggcgatactcaaccag
attgaagagtctggttttgactggcagatcccgggaattcgccgagaattagtgattgcg
ctgattaaatcgctgccaaaacctattcgacgcaattttgttcctgcgcctaactatgct
gaagcctttttaggccgcgcaacgccgctggaaatgccgttgttggagtcgatggaacgc
gaactacgccgcatgactggcgtgacagtgtcacgcgaagagtggcagctagaccaggtt
cccgatcatctgcgcatgacgttccgcgtcattgacgacaaaaagaaaacgctggctgaa
ggtaagtcgcttgaagcgctgaaaactcagctaaaaggtcaggtgcagcaaacgctgtca
gaagtggccgacgatggactagaacagcagggcttgcatgtatggagctttggctctctg
ccgcaaagctacgagcagaagcgcggcggttattcgatgaaggcatttcctgctttggtg
gatgaaaaagacagcgttgcgattcggctgtttgaaaccgagcaggaacagcagcaggca
atgtggcagggttcgcgtcgtttattgctgctaaacattccttcgccgataaagtatttg
catgaaaagttgccgaataaagccaagctggggttgtacttcaatccttatggcaaagtg
ttggatttgattgatgattgtatcgcctgcggtatcgactcattgattgccaaacacggt
ggccccgcctggaatgaagaaggttttactcaacttcatgaacaggtgcgcgcagaactt
aacgatgaagtggtgtcgattgcgcgtcaggtggaacaaatactgacaacggccaatggc
attaataaacggctcaaaggccgcgttgatatgtcattagcgctggcgctgtcagatatc
aaaaatcaggttggtaatcttatctatcgtggttttgttaccgctactggcgcatcgcgt
ttacctgatgtggagcgttacctgcatgccattgaacggcgattggagaaggtggcgacc
gatcctcatcgtgatcgtgcgcaaatgctaaaggtcgaacaggtacaacaggcatggaag
caaatgctcaacaagctaccggcacagcgtgccggagagccagaaatcaaagaaattcgc
tggatgatcgaagagctgcgcgtgagttatttcgcccagcaattgggtacaccgtaccca
atatcagaaaaacgcatcatgcaggctattgatcagattttggcttag
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integrated database retrieval system
