Enterobacteriaceae bacterium bta3-1: F652_2598
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Entry
F652_2598 CDS
T09572
Symbol
rtcB
Name
(GenBank) Protein RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ebb
Enterobacteriaceae bacterium bta3-1
Brite
KEGG Orthology (KO) [BR:
ebb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ebb03016
]
F652_2598 (rtcB)
Enzymes [BR:
ebb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
F652_2598 (rtcB)
Transfer RNA biogenesis [BR:
ebb03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
F652_2598 (rtcB)
Prokaryotic type
tRNA splicing ligases
F652_2598 (rtcB)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
AJR00587
LinkDB
All DBs
Position
complement(2896754..2898010)
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AA seq
418 aa
AA seq
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MNNKIIKNEDIQKASYKTIESANSAPVKMWTQGVPVEQEAYQQLMKTAKMPFIFKHLAVM
PDVHLGKGSTIGSVIPTQGAIIPAAVGVDIGCGMIAVRTSLTASDLPDHLYAIRSAIEQA
VPHGRTVGHTKRDKGSWHNAPELVDRHWRTLESGFKRITDKYPDLLRANSYKHLGTLGTG
NHFIELCLDEQDQVWVMLHSGSRGVGNAIGNLFITLAQQDMRQHIANLPDHNLAYFEEGS
RHFSDYMEAVGWAQDFARQNREVMMTRVLEALAREIPKPFTAIQEAVNCHHNYVQREQHF
GEEVLVTRKGAVSAQKGEMGIIPGSMGAKSYIVRGLGNEESFCSCSHGAGRAMSRTAAKK
LFTLTDQIRATAHVECRKDSDVIDEIPMAYKDIDAVMAAQSSLVEIVHTLRQVVCVKG
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgaataataaaataattaaaaacgaagatattcaaaaagccagttataagacgattgaa
tccgccaattctgcaccggtaaaaatgtggactcagggcgtaccggtcgagcaggaggct
tatcagcagctgatgaaaacggcaaaaatgccatttattttcaaacatctggctgtgatg
cctgatgttcatctaggaaagggatcgaccattgggagtgtgatcccaacccaaggggca
attatacccgccgccgtgggtgtggatatcggttgtggaatgatcgccgtgcgaacgtcg
ttaacagcgagcgatctgcccgatcatctgtatgcaatccgtagtgccatcgaacaggcg
gtaccacatggacgtaccgttgggcacaccaaacgagataaaggatcttggcataacgcc
cctgagttggttgatcgtcattggcgaacgctcgaatctggttttaaacgtattaccgat
aaatatcctgatttgttgcgagccaacagctataagcatctgggaacgttaggtacaggt
aatcactttattgagctgtgtttggatgaacaggatcaggtatgggtgatgttgcatagc
ggttcacgtggtgtgggtaatgcgataggtaacttgtttatcacgttggcgcagcaggat
atgcgtcagcacatcgccaacctgcccgatcataacctagcttatttcgaagaagggagc
cgtcacttttctgattatatggaagccgtggggtgggcgcaggatttcgctcgtcaaaac
cgtgaagtgatgatgacgcgtgtactggaagcgttagcgcgagagatccctaagccgttt
acggctattcaagaagccgtgaattgtcaccataactatgtgcagcgtgaacagcatttt
ggcgaagaggtattggtaacgcgtaaaggggcggtgtcagcgcaaaaaggtgagatgggg
attattcccggttcgatgggcgcgaaaagttacatcgtgcgtggtttgggaaacgaggaa
agcttctgctcatgtagccacggcgcagggcgtgcaatgagtcgaaccgcagccaaaaaa
ctttttaccttaaccgatcagatccgtgcgacagcccacgttgagtgccgtaaagacagt
gacgttattgatgaaatcccgatggcgtacaaagacattgatgcggttatggcggctcag
tcttcgttagttgaaattgtacatacgctgcgtcaggtggtgtgtgtaaaaggatga
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