Enterobacteriaceae bacterium bta3-1: F652_3648
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Entry
F652_3648 CDS
T09572
Name
(GenBank) DNA-directed RNA polymerase beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ebb
Enterobacteriaceae bacterium bta3-1
Pathway
ebb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ebb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
F652_3648
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ebb03021
]
F652_3648
03400 DNA repair and recombination proteins [BR:
ebb03400
]
F652_3648
Enzymes [BR:
ebb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
F652_3648
Transcription machinery [BR:
ebb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
F652_3648
DNA repair and recombination proteins [BR:
ebb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
F652_3648
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
LPD39
Motif
Other DBs
NCBI-ProteinID:
AJR01637
LinkDB
All DBs
Position
4088001..4092221
Genome browser
AA seq
1406 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVVEGGMTNLERRQILTEEQYLDALEEFGDEFDAKM
GAEAIQGLLKNMDLEAECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VMLNRAPTLHRLGIQAFEPLLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLSGPKEAERIYRAG
LASLHARVKVRITQTEKNAEGEWVTTTGLVDTTVGRAILWMIVPQGLPYSIVNQPLGKKA
ISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKVEIISEAEAE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMENLSTELVINSKGEEERQVSFN
SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVIEDDCGTHNGIVMTPVIEGGDVKEPLRDRVL
GRVTAEEVLKPGTADILVPRNTLLNEKWCDLLEEHSVDIIKVRSVVSCETDFGVCAHCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGHLKL
NNAKFVLNSDKKLVITSRNTELKLIDEFGRTKESYKVPYGSVMAKGDGAEVNGGETVANW
DPHTMPVVSEVSGFIRFTDIIDTQTITRQTDELTGLSSLVVLDSAERTGSGKDLRPALKI
VDAKGNDVLIPGTDMAAQYFLPGKAIVQLEDGAQIHAGDTLARIPQESGGTKDITGGLPR
VADLFEARRPKEPAILAEITGVISFGKETKGKRRLVITPLDGSEPYEEMIPKWRQLNVFE
GERVERGDVVSDGPESPHDILRLRGVHAVTRYITNEVQDVYRLQGVKINDKHIEVIVRQM
LRKATIESAGSSEFLEGEQVEFSRVKIANRELEANGKIAATYSRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRARRKAQGEAPV
VPQVSAEEATANLAELLNASMRGDDE
NT seq
4221 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttactgaagtttctgaaagctcaaactaagaccgaagagtttgacgcgatc
aaaattgctctggcctcgccagacatgatccgttcttggtctttcggcgaagttaagaag
ccggaaaccattaactaccgtacgttcaaaccagaacgtgacggccttttctgcgcccgt
atctttgggccggtaaaagattacgaatgcctgtgcggtaagtacaagcgtttaaaacac
cgcggtgttatctgcgaaaaatgtggtgttgaagttactcagactaaagtacgtcgtgag
cgtatgggccatatcgaactggcttctccgactgcacacatctggttcctgaaatcactg
ccatcccgtatcggcctgttgttagacatgcctctgcgtgatattgagcgcgtactgtac
ttcgaatcttatgttgtggttgaaggcggtatgaccaatctggaacgtcgtcagatcctg
actgaagagcagtatctggacgctctggaagagttcggtgacgaattcgacgcgaagatg
ggtgctgaagctatccaaggtctgttgaaaaacatggatctggaagcggaatgcgaacag
ctgcgtgaagagttgaacgaaaccaactccgaaaccaaacgtaaaaagctgaccaagcgt
atcaaactgctggaagcgttcgttcagtctggtaacaaaccagagtggatgatcctgacc
gttctgccggttctgccgccagatctgcgcccattggtaccgctggatggtggtcgtttc
gcgacttctgacctgaacgatctgtatcgtcgcgtcattaaccgtaacaaccgtctgaaa
cgtctgctggatctggctgcgccggatatcatcgtacgcaacgaaaaacgtatgcttcag
gaagcggttgacgccctgttggataacggtcgtcgtggtcgtgcgatcaccggttcaaac
aaacgtcctctgaaatctttggccgatatgatcaaaggtaagcagggtcgtttccgtcag
aacctgttgggtaaacgtgttgactactccggtcgttctgtaatcaccgtaggtccatac
ctgcgtctgcatcagtgcggtctgcctaagaaaatggctctggagctgttcaagccgttc
atctatggcaagctggaactgcgtggtcttgctaccaccattaaagctgcgaagaaaatg
gttgagcgcgaagaagctgtcgtttgggatatcctagacgaagttatccgcgaacaccca
gtgatgctgaaccgtgcaccaaccctgcaccgtttgggtatccaggcatttgaaccgtta
ctgatcgaaggtaaagctattcagctgcacccgctggtctgtgcggcgtataacgccgac
ttcgatggtgaccagatggctgttcacgtaccgttgacgctggaagcccagttggaagcg
cgtgcgttgatgatgtctaccaacaacattctgtcaccagcgaacggcgagccaatcatc
gttccttctcaggacgttgtattgggtctgtattacatgactcgtgactgtgttaacgct
aaaggcgaaggcatggttctgagcggccctaaagaagcagagcgtatctatcgcgctggt
ctggcttctctgcatgctcgcgttaaagtgcgtatcacgcaaaccgagaaaaatgcagaa
ggcgaatgggttacaactactggcttggtcgataccaccgttggtcgtgcgattctgtgg
atgattgtgcctcagggcctgccatacagcatcgttaaccagccgttgggtaaaaaagcg
atctccaagatgctgaacacgtgttaccgcatcttgggtctgaagccgactgttatcttt
gctgaccagatcatgtacaccggttttgcctacgctgcgcgttcaggtgcttccgttggt
atcgatgatatggttatcccagagaagaaagtggaaatcatttctgaagctgaagccgaa
gtggctgaaattcaggaacagttccagtctggtctggttacagcgggcgaacgttacaac
aaagtcatcgatatttgggctgcggccaacgaacgtgttgctaaagcgatgatggaaaac
ctgtctaccgagctggttattaacagcaaaggtgaagaagagcgtcaggtttccttcaac
agcatctttatgatggccgactccggtgctcgtggttctgctgcgcagattcgtcagctg
gccggtatgcgtggtctgatggctaagccagacggctccatcattgaaacgccaatcacc
gcgaacttccgtgaaggtctgaacgtactccagtacttcatctctactcacggtgctcgt
aaaggcttggcggataccgcactgaaaactgcgaactccggttacctgactcgtcgtctg
gtagacgtagcgcaagacttggtcgttatcgaagatgactgcggtactcataacggtatc
gtgatgactccggttatcgaaggtggtgatgttaaagaaccactgcgcgaccgcgtattg
ggtcgtgtgacggctgaagaagttctgaagccgggcaccgcagacattctggttccgcgc
aacaccctgctgaatgaaaaatggtgtgatctgttagaagaacactccgttgacatcatc
aaggttcgttctgttgttagctgtgaaaccgacttcggtgtgtgtgcgcactgctatggt
cgtgacttggctcgtggccacatcatcaacaagggtgaggcaatcggggttatcgcggca
cagtccatcggtgaaccaggtacacagctgacgatgcgtacgttccacatcggtggtgcg
gcatctcgtgcggcagcagagtccagcattcaggtgaaaaacaaaggtcatctgaaactg
aacaacgctaagttcgttctgaatagcgataagaagctggttattacgtctcgtaatacc
gagctgaaactgatcgacgaattcggacgtactaaagaaagctataaagtgccttacggt
tctgttatggctaaaggcgatggcgctgaagttaatggcggcgaaaccgtagcgaactgg
gacccgcataccatgccggttgtttcagaagttagtggtttcatccgtttcactgacatc
attgatacccagaccattacccgccagactgatgaactgactggtttgtcttctctggtc
gttctggactctgcagagcgtaccggtagcggtaaagatctgcgtccagcgctgaaaatc
gttgatgctaaaggcaacgatgtattgatcccaggcactgatatggctgctcaatacttc
ctgccgggtaaagcgattgttcagttggaagatggtgctcagatccatgcaggtgacacc
ttggcgcgtattcctcaggaatccggcggtaccaaggatattaccggtggtctgccacgc
gttgctgacctgtttgaagcacgtcgtccgaaagagcctgcgattctggcagaaattact
ggcgtcatttccttcggtaaagaaaccaaaggtaaacgtcgtctggtaattactcctctg
gatggtagcgaaccgtacgaagagatgattcctaaatggcgtcagctgaacgtgttcgaa
ggcgaacgtgtagaacgtggtgacgtggtttccgatggtccagaatctccgcatgacatt
ctgcgtctgcgtggcgttcatgctgtgactcgttatatcaccaacgaagtgcaggacgtt
taccgtctgcaaggcgttaagattaacgataaacacatcgaagtcatcgtacgtcagatg
ctgcgtaaagcaaccatcgaaagtgctggtagctccgagttcctggaaggcgaacaggtt
gaattctctcgcgttaaaatcgcgaaccgtgagctggaagctaacggcaagattgcggca
acttacagccgtgacctgctgggtatcaccaaagcttcactggcgactgagtccttcatc
tctgcggcttcgttccaggaaacaactcgcgtactgaccgaagcggccgttgcgggtaaa
cgcgacgaactgcgcggcctgaaagaaaacgtaatcgtgggtcgtctgatcccagccggt
accggttatgcttatcatcaggatcgtgcgcgccgtaaagctcagggcgaagcgcctgta
gttccacaggtgagcgctgaagaagcaactgctaacttggcagagctgctgaacgctagc
atgcgtggtgacgacgagtaa
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integrated database retrieval system
