Enterobacteriaceae bacterium bta3-1: F652_3931
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Entry
F652_3931 CDS
T09572
Name
(GenBank) Cold-shock DEAD-box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ebb
Enterobacteriaceae bacterium bta3-1
Pathway
ebb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ebb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F652_3931
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ebb03019
]
F652_3931
03009 Ribosome biogenesis [BR:
ebb03009
]
F652_3931
Enzymes [BR:
ebb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
F652_3931
Messenger RNA biogenesis [BR:
ebb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
F652_3931
Ribosome biogenesis [BR:
ebb03009
]
Prokaryotic type
rRNA helicases
F652_3931
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
DbpA
ResIII
CMS1
Cas3-like_C_2
AAA_30
LisH_WDR26
Motif
Other DBs
NCBI-ProteinID:
AJR01920
LinkDB
All DBs
Position
4408180..4410090
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AA seq
636 aa
AA seq
DB search
MAEFETSFADLGLAAPIIQALTDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF
SLPLLHNIDPSLKAPQVLVLAPTRELAVQVSEAMADFAKHMNGVNVVALYGGQRYDVQLR
ALRQGPQIVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAQIPAQ
HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSITTRPDISQSYWTVFGMRKNEALVRFL
EAEDFDAAIIFVRTKNATLEVAEALERSGYSSAALNGDMNQALREQTLERLKDGRLDILI
ATDVAARGLDVDRISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI
ERIMKLTIPEVEIPNAELLGQRRLAKFAAKVQQQLESSDLDKYRDLLTKLQPEDELDMET
LAAALLKMAQGERPLILPPDPVMERRPRREFRDRDDRNERGGDRFARRGDREPREAREGA
PRRERRDAGDMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPK
GMPGDLLSHFTRTRILNKPLNMQLMGDAPAREPRRERPAGDRGGRSAGGERRSFGGRDGA
PRRDDRRGNSDRSAAPRGPRRDDAAQPPRRRTTNDA
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atggctgagttcgaaacttcttttgctgacctagggttagctgcaccaattatccaagcc
ctgaccgatctgggctacgaaaaaccgtctccaatccaggcggaatgtattcctcacctt
ttaaatggccgtgacgttctgggtatggctcagaccggttccggtaagaccgcagcgttt
tctttgccgctgctgcataatattgatccaagcctgaaagcaccacaggtgctggttctg
gctccaactcgtgagctggcggttcaggtttctgaagcgatggctgatttcgctaaacac
atgaacggcgtaaacgttgttgctctgtacggtggccaacgctacgacgtacagctgcgc
gctctgcgtcaggggccacagattgttgttggtactcctggtcgtctgctagaccacctg
aagcgtggcaccctgaacctgtctaacctgagtggtttggttctggacgaagctgacgaa
atgctgcgtatgggcttcatcgaagacgttgaaaccatcatggcgcagatcccagcacag
caccagacagcactgttctctgcaactatgcctgaagccattcgtcgtattacccgtcgc
ttcatgaaagagcctcaggaagtacgcattcagtcaagcattacgactcgtccagacatt
agccagagctactggactgtgttcgggatgcgtaaaaacgaagcgctggttcgcttcctt
gaagctgaagattttgatgctgcaatcatcttcgtacgtaccaaaaatgcgactctggaa
gttgctgaagcattggagcgtagtggttacagcagcgccgctctgaacggtgatatgaat
caggctctgcgtgagcagactctggaacgtttgaaagatggtcgtttagatatcctgatt
gcaaccgatgttgctgcacgtggtctggacgttgaccgtatcagtctggttgttaactat
gacatcccgatggactccgagtcttacgttcaccgtatcggccgtaccggtcgtgctggc
cgcgctggccgtgcgttgctgttcgttgagaaccgtgaacgtcgcctgttgcgtaacatt
gaacgcatcatgaagctgaccattccagaagttgaaatccctaatgcagaactgctgggt
caacgtcgtctggctaagtttgccgctaaagttcagcagcaactggaaagcagcgatctg
gataaataccgcgatctgctgactaaactgcagccggaagatgaactggatatggaaact
ctggccgcagcattgctgaaaatggcacagggcgaacgtccactgatcctgccacctgat
ccggttatggaacgccgtccacgtcgtgaattccgtgaccgtgacgatcgcaatgaacgc
ggtggcgatcgcttcgctcgtcgtggtgaccgtgagccacgtgaagcccgtgaaggtgcg
ccacgtcgtgaacgtcgtgatgctggcgatatggaactgtaccgtatcgaagtgggtcgt
gatgatggtgttgaagttcgtcacatcgttggtgctattgctaacgaaggtgatattagc
agccgttacatcggtaacatcaagctgtttgcttctcactcaacgatcgagctgccaaaa
ggtatgccaggtgatctgctgtctcacttcacccgtacccgtatcctcaataagccgctg
aatatgcagctgatgggtgatgctccagcacgtgaaccacgtcgtgaacgtcctgcaggc
gatcgcggtggccgtagcgccggtggcgagcgtcgcagcttcggtggacgtgatggcgca
cctcgtcgtgatgaccgtcgtggtaacagcgatcgcagtgcagcgccgcgcggcccacgc
cgtgatgatgcagcacagccgccacgtcgtcgtacaactaacgacgcgtaa
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