Enterobacteriaceae bacterium ENNIH2: C2U52_20060
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Entry
C2U52_20060 CDS
T05417
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ebc
Enterobacteriaceae bacterium ENNIH2
Pathway
ebc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ebc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
C2U52_20060
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ebc03400
]
C2U52_20060
Enzymes [BR:
ebc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C2U52_20060
DNA repair and recombination proteins [BR:
ebc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
C2U52_20060
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
MFD_D3
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
RecG_dom3_C
DUF488
Motif
Other DBs
NCBI-ProteinID:
AUV08385
LinkDB
All DBs
Position
complement(3654649..3658095)
Genome browser
AA seq
1148 aa
AA seq
DB search
MPEQYRYSLPAKAGEQRQLGELTGAACATEVAEIIERHKGPVVLIAPDMQNALRLHDEIT
QFTDNLVMNLADWETLPYDSFSPHQEIISSRLSTLYQLPSMQRGVLIVAVNTLMQRVCPH
SYLHGHALVMKKGQRLSRDALRAQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSAQPY
RLDFFDDEIDSLRLFDADSQRTLEEVEAINLLPAHEFPTDKTAIELFRSQWRDKFDVKRD
AEHIYQQVSKGTLPTGIEYWQPLFFSEPLPSLFSYLPDNTLLINTGDLENSAERFSQETL
ARFENRGVDPMRPLLAPELLWLRVDELFSELKRWPRVQLKTENLADKTANVNLGYRTLPD
LAVQAQQKSPLDNLRKFLESFTGPVVFSVESEGRREALGELLSRIKVAPKRITRLDDAQD
TGRYLIIGSAEHGFIDTLRNRALICESDLLGERVARRRQDTRRTINPDTLIRNLAELHPG
QPVVHLEHGVGRYAGMTTLEAGGIKGEYLMLTYAGDAKLYVPVSSLHLISRYAGGAEENA
PLHKLGGDAWARARQKAAEKVRDVAAELLDIYAQRAAKSGFAFKHDREQYQLFCDSFPFE
TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENNKQVAVLVPTTL
LAQQHFDNFRDRFANWPVRVEMLSRFRSAKEQTQVLEQAAEGKIDILIGTHKLLQNDVKW
KDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP
ARRLAVKTFVREYDSLVVREAILREVLRGGQVYYLYNDVENIQKAADRLAELVPEARIAI
GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR
GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG
EDQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDV
NTRLSFYKRIASAKSENELDEIKVELIDRFGLLPDAARNLLDIARLRQQAQKLGIRKLEG
NEKGGTIEFNEKNHVNPAWLIGLLQKQPKHFRLDGPTRLKFFQELTERKTRMEWVRNFMQ
QLEENAMA
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaacaataccgttattctctgcccgccaaagctggcgagcagcgccagcttggc
gaactgactggcgcagcctgcgccaccgaagtcgcggaaatcattgaacgccataaaggt
ccggtggtattgattgcgccggatatgcaaaatgccctgcgtctgcatgacgaaattacc
cagtttaccgacaacctggtgatgaatcttgctgactgggagacactgccgtatgacagt
ttctcgccgcatcaggaaattatctcctcccgtctctccacgctctaccagttgccctct
atgcagcgtggtgtgctgattgtagcggtgaataccttgatgcagcgcgtctgcccgcat
agctatttgcacggtcacgcgttggtcatgaaaaaaggtcagcgtctgtcccgtgacgcg
ctgcgcgcgcaactggacagcgctgggtatcgccacgtcgatcaggttatggaacacggc
gagtacgcgactcgcggggcgctgctggatctcttcccgatgggcagcgcacaaccttat
cgccttgatttctttgatgatgaaattgacagtcttcgcctgttcgatgcggacagccag
cgtacgctggaagaggttgaagccatcaatttactgcctgctcacgaattcccgacggat
aagaccgccatcgaactgtttcgcagccagtggcgagataagttcgacgtcaagcgcgat
gccgaacatatctatcaacaggtgagcaaaggcactttgccaaccggcattgaatactgg
cagccactgtttttcagtgagcctttgccgtcgttgtttagctatttgccggacaatacg
ctactgataaacacgggggatcttgaaaacagcgctgagcgctttagccaggagaccctg
gcgcgcttcgaaaaccgcggcgtggacccaatgcgccctctgctggcgccggaattactg
tggctgcgggttgatgaactgttcagcgaactcaagcgctggccgcgcgtgcagctcaaa
accgaaaacctggcagacaaaaccgccaatgtgaacctcggctaccggacattgccggat
ctggccgttcaggcacagcaaaagtcgccgctggataatttacgcaaattcctcgaatcc
tttaccggtccggtcgtcttttcggttgagagcgaggggcgtcgcgaagcgctgggagaa
ctcctctcacgcatcaaagtggcgccgaagcgcattacccggctggatgacgcgcaagat
acagggcgctatctgatcattggctccgcagaacatggctttatcgacacgctacgtaac
cgggcgttgatttgcgaaagcgatctgctgggcgagcgcgttgcccgccgccgccaggat
acacgccgcacgattaaccccgatacgctgatccgcaacctcgctgaactgcaccctggc
cagccggtggtgcatctggaacatggggttggacgctatgcgggaatgaccacgcttgaa
gcgggcggcataaaaggcgaatacctgatgctgacctatgccggggatgccaaactgtac
gtgccggtctcgtcgttgcatctgattagccgctatgccgggggtgccgaggagaacgcg
ccgctgcataaactgggcggcgatgcatgggcccgcgcgcggcagaaagcggcagaaaaa
gtccgggatgtggcggcggaattgctggatatctatgcccaacgcgccgcgaagtccggc
tttgcatttaaacacgatcgcgaacaatatcagcttttctgcgacagcttcccgtttgaa
accacgccagaccaggcgcaagccattaacgcggtgttaagtgacatgtgccagccgctg
gccatggaccgcctggtgtgtggcgatgtcggcttcggtaaaaccgaagtggcaatgcgt
gccgccttcctcgccgtcgaaaacaacaagcaggtggcggtgttggtgccaaccaccctg
ctcgcccagcagcatttcgacaacttccgcgatcgcttcgccaactggccggtgcgggtg
gagatgctctcacgttttcgtagcgcgaaagaacagacacaagtgctggagcaggcggct
gagggcaagattgatattcttatcggcacccataagctgctgcaaaacgatgtgaagtgg
aaagatctgggactgctgatcgtcgatgaagaacaccgcttcggcgtgcgtcataaagag
cggattaaagcgatgcgggctgacgtagatatcctcacgctaaccgcaacccccattccg
cgtacactcaatatggccatgagcggtatgcgcgatctgtcgatcatcgccaccccgcct
gcgcgccgcctggcagtgaaaaccttcgttcgcgaatacgacagtctggtagtgcgcgag
gcaatactgcgtgaagtcctgcgtggtgggcaggtctactacctttataacgatgtcgaa
aatattcagaaagccgccgacagactggcggaactggttccggaagcgcgcatcgccatc
ggacacgggcagatgcgtgagcgcgaactggaacgggtaatgaatgatttccaccaccag
cgttttaatgtgctggtgtgtaccacgataatcgagaccgggatcgacattcctaccgcg
aatacaatcattattgaacgtgccgatcactttggcctggcgcagctccaccagttacgt
ggccgcgtgggacgttcgcaccatcaggcctatgcctggctgctgacgccgcatccgaaa
gcgatgaccaccgatgcgcaaaagcgtctcgaagcgattgcctcgctggaagatttaggg
gcgggtttcgcgctggcgacccacgatctggaaatccgtggggctggcgaactgttgggc
gaagatcagagcggttcaatggagaccatcggcttttcactgtatatggagctgctggaa
aatgcggtcgatgcgctcaaagccgggcgagagccatcgctcgaagatctcaccagccag
caaacagaagtcgaactgcgcatgccttccctgctgccggatgattttattcccgacgtc
aatactcgtctctctttctacaagcgcattgccagtgcgaagagtgaaaatgagctcgat
gaaattaaagtggaactgatcgaccgttttggtctgctgcctgacgccgcgcgaaacctg
cttgatattgcgcggctgcgtcaacaggcccagaaattggggattcgtaagctcgaaggg
aatgaaaaaggcggcacgattgagttcaatgaaaaaaaccatgtcaatcccgcatggctt
atcggcctgctgcaaaagcagcctaaacatttccgcctcgatggcccgacacgcctgaag
ttcttccaggagctgacggaacgcaaaacccgcatggagtgggtacgcaactttatgcag
cagcttgaagaaaacgcgatggcatag
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