Escherichia coli BL21-Gold(DE3)pLysS AG: ECBD_0905
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Entry
ECBD_0905 CDS
T00939
Name
(GenBank) exodeoxyribonuclease V, beta subunit
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
ebd
Escherichia coli BL21-Gold(DE3)pLysS AG
Pathway
ebd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ebd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
ECBD_0905
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ebd03400
]
ECBD_0905
Enzymes [BR:
ebd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
ECBD_0905
DNA repair and recombination proteins [BR:
ebd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
ECBD_0905
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_11
AAA_25
BscB_a-b
Cas_Cas2CT1978
Motif
Other DBs
NCBI-ProteinID:
ACT27972
LinkDB
All DBs
Position
945621..949163
Genome browser
AA seq
1180 aa
AA seq
DB search
MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELL
VVTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQ
MDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIA
QVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAV
GELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKA
GGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDS
ALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIY
AFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKS
AGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALL
MNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLL
QAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPM
LRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDS
NASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAVLDL
NAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGR
LLQKGEPQDAAGLRTCIEALCDDDIAWQTAQIGDNQPWQVNDVSTAELNAKTLQRLPGDN
WRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFE
DLDFTQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVE
MEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLD
YKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYDRHFGGVIY
LFLRGVDKEHPQQGIYTTRPNAGLIDLMDEMFAGMTLEEA
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
atgagtgatgtcgccgagacactagatcctttgcgcttgcccttacagggtgagcgcctg
attgaagcctctgccggcacaggcaaaacctttacgattgcggcgctctatttgcgcctg
ttacttggactaggcggttccgccgcctttccccgcccgctgaccgttgaagaactgctg
gtggtcacctttaccgaggctgccacggcagaattgcgtggtcgtatccgtagcaatatc
cacgagttgcgcatcgcctgtctgcgtgaaaccaccgacaatccactgtacgaacgcctg
ctggaagagatcgacgataaagcgcaagccgcgcagtggttgttgttagccgaacggcag
atggatgaagcggcagtctttactattcacggtttttgccagcgcatgctcaacctgaat
gcctttgaatccggtatgctgtttgagcagcagctgattgaagatgagtctctgctacgc
taccaggcctgcgccgatttctggcgtcgccactgctacccgctgccgcgtgaaatagcc
caggtcgtctttgaaacctggaaagggccgcaggcgttgctgcgcgatattaatcgttat
ctgcaaggcgaagcgccggttatcaaagcaccgccgcccgatgatgaaacgttggcttcc
cgccacgcgcaaattgtggcgcgtattgatacggtaaaacagcagtggcgcgacgcagtg
ggtgaactggatgcgctgatcgaatcttctggtattgatcgacgcaagtttaaccgtagc
aatcaggctaaatggatcgacaagatcagcgcctgggcagaagaagagaccaacagttat
cagttgccagagtcgctggaaaaattctcccagcgtttcttagaagatcgcacgaaagcc
gggggggaaaccccgcgacatccactgtttgaggcgatcgatcaactgcttgcagaacca
ttgtcgatccgcgatctggtgatcacccgcgcattggctgagatccgcgaaacagtagcg
cgtgaaaaacgccgccgtggcgaattgggttttgatgacatgttaagtcggctcgattcc
gcgctgcgtagcgaaagcggtgaggtgttggcagcggcgatccgtacgcgattcccggtg
gcaatgatcgatgaatttcaggataccgacccccagcagtaccgaatttttcgccgtatc
tggcaccatcagccggaaaccgcattgttgctgattggcgacccgaagcaggccatatat
gcattccggggtgcggatatcttcacttatatgaaggcgcgtagcgaagttcacgcccac
tacactttagacaccaactggcgttccgcaccaggaatggtgaacagcgtgaataagctt
ttcagccagactgatgacgcgttcatgtttcgcgaaataccgtttattccagtgaaatca
gccgggaaaaatcaggcgttacgttttgtatttaaaggtgaaacacagcctgcgatgaaa
atgtggctgatggaaggcgaaagctgcggcgttggcgattatcaaagtaccatggcgcag
gtatgtgctgcgcaaatccgcgactggctacaagccggacagcggggcgaagcgttgctg
atgaacggcgacgacgcgcgtccggtgcgtgcttcggacatcagtgtgctggtgcgcagc
cgccaggaggccgcccaggtgcgcgatgccttaacgttgctggaaatcccttccgtttac
ctttcgaaccgcgacagtgtttttgaaactctggaagcgcaggaaatgctttggttgttg
caggcggtgatgacgcccgaacgtgagaacaccctgcgtagtgcgctggcaacgtcaatg
atggggctgaacgcgctggatatcgaaacgctgaacaatgacgaacatgcgtgggatgtg
gtagtcgaagagttcgatggttatcggcaaatctggcgcaaacgtggcgttatgccgatg
ctgcgggcgctgatgtcggcgcgtaacattgctgaaaacttgctggcaacggcaggcggt
gagcggcgtcttaccgatatcttgcatatcagcgaactgctacaagaagccggaacgcag
ctggaaagtgaacatgcgctggtacgctggttatcgcaacatatcctcgagccagacagt
aatgcctccagccaacaaatgcgtctcgaaagtgataaacatctggtgcagattgtcacg
atccacaaatcgaaagggctggaatatccattggtctggctgccgtttatcaccaatttc
cgcgtccaggagcaggcgttttatcacgatcgccactcgtttgaggcagttctggatctt
aatgctgcgccagaaagcgtcgacctcgcggaggccgaacgtctggcggaagatctgcgt
ttgctttacgtggcgctgacgcgttcggtttggcattgtagtctcggcgttgcaccgctg
gtgcgccgtcgtggcgataaaaaaggtgacaccgacgtccaccaaagtgcgctcgggcgt
ttgctgcaaaaaggggaaccgcaagatgcggcagggcttcgcacctgtattgaagcattg
tgcgatgatgatattgcctggcaaacggcacaaattggtgataaccaaccctggcaggtt
aatgatgtttctacagcagagctgaatgcgaagacgttacaacgattgcccggcgataac
tggcgcgtcaccagctactctggtttgcaacagcgtggtcacggtatcgcccaggatttg
atgcctcggctggatgtcgatgctgcaggcgttgccagcgtcgttgaagaaccgacgtta
acaccacatcagtttccgcgcggtgcgtcaccggggacgttcttgcacagtttgtttgaa
gacctggattttacccagccggttgacccgaactgggtgcgggaaaaactggaactcggc
ggctttgaatcgcagtgggaaccggtattgaccgagtggatcacggctgtcctccaggca
cctctcaatgaaaccggcgtaagcctgagtcaactttccgcccgcaataaacaggtggag
atggagttttatctgccgattagtgaaccgcttatcgccagtcagcttgatacgttaatc
cgccagtttgacccgctatccgcaggctgcccgccgctggagttcatgcaggtacgtggc
atgttaaaaggctttatcgacctggtgttccgccacgaagggcgttattacctgctcgac
tataaatccaactggttgggtgaagacagttcggcttacacccaacaggctatggcagca
gcgatgcaggcacaccgctatgatctgcaatatcagctttataccctggcgctgcatcgt
tatctgcgccatcgcattgctgattacgactatgatcgtcactttggcggcgttatctat
ctgttcctgcgtggcgttgataaagaacatccgcaacaggggatttacacaacccgaccc
aatgcagggttgattgacctgatggatgagatgtttgccggtatgaccctggaggaggcg
taa
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