Escherichia coli BL21-Gold(DE3)pLysS AG: ECBD_4216
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Entry
ECBD_4216 CDS
T00939
Name
(GenBank) ATP-dependent DNA helicase, RecQ family
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ebd
Escherichia coli BL21-Gold(DE3)pLysS AG
Pathway
ebd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ebd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ECBD_4216
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ebd03019
]
ECBD_4216
03400 DNA repair and recombination proteins [BR:
ebd03400
]
ECBD_4216
Enzymes [BR:
ebd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ECBD_4216
Messenger RNA biogenesis [BR:
ebd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ECBD_4216
DNA repair and recombination proteins [BR:
ebd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
ECBD_4216
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Helicase_Sgs1
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
ACT31198
LinkDB
All DBs
Position
complement(4443250..4445085)
Genome browser
AA seq
611 aa
AA seq
DB search
MNVAQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQ
IPALLLNGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRL
LYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFM
ALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPLDQLMRYVQEQRGKS
GIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNIRVDVQEKFQRDDLQIVVATVAFGM
GINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKPQG
QLQDIERHKLNAMGAFAEAQTCRRLVLLNYFGEGRQEPCGNCDICLDPPKQYDGSTDAQI
ALSTIGRVNQRFGMGYVVEVIRGANNQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIH
LGLVTQNIAQHSALQLTEAARPVLRGESSLQLAVPRIVALKPKAMQKSFGGNYDRKLFAK
LRKLRKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMAL
IRAHVDGDDEE
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
gtgaatgtggcgcaggcggaagtgttgaatctggagtccggggctaaacaggttttacaa
gaaacctttggctaccaacagtttcgccccggccaggaagaaattatcgacactgtgctt
tccggccgcgattgcctcgtcgtcatgcccactggtggcggaaaatccctttgctatcaa
atccctgccttattgctaaacggccttaccgtggttgtttcaccgctgatttccttgatg
aaagatcaggtggatcaactgcaagccaacggcgtggcggcggcgtgccttaactcgacg
caaacccgcgagcagcaacttgaagttatgacaggctgtcgcaccgggcaaatccgcctg
ctttatatcgcgccggaacgcctgatgctggataactttcttgagcatctggcgcactgg
aatccggtgttattagccgttgatgaagcgcactgtatctcccaatggggccacgatttc
cgcccggaatacgctgccctcggtcagctgcgtcagcggttcccgacgctcccgtttatg
gcgctgactgccacagccgatgacaccacgcggcaggatatcgtgcgcctgctggggctg
aacgatccgctgattcaaatcagcagttttgatcgcccgaacattcgctacatgctgatg
gagaaattcaaaccgctcgatcagttgatgcgctacgtgcaggaacaacgcggtaagtcg
gggattatttactgcaacagccgggcgaaagtagaagacaccgctgcgcgcctgcaaagc
aagggaattagcgcggcggcctatcatgccgggctggaaaataatattcgcgtcgacgtg
caggaaaaatttcagcgcgatgacctgcaaattgtggtggcgaccgtggcgtttggcatg
ggcatcaacaagcctaacgtccgcttcgtggtccactttgatattccgcgcaatatcgaa
tcctattatcaggaaaccggtcgcgccgggcgtgatggcctgcccgcggaagcgatgctg
ttttacgatccggccgatatggcgtggctacgccgttgtctggaagagaagccgcagggg
caattgcaggatatcgagcgccataaactcaatgcgatgggcgcgtttgccgaagcgcaa
acttgccgtcgtctggtgctgctgaactactttggcgaagggcggcaggagccgtgcggg
aactgcgatatctgcctcgatccgccgaaacaatacgatggttcaaccgatgctcagatt
gccctttccaccattggtcgtgtgaatcagcggtttgggatgggttatgtggtggaagtg
attcgtggcgctaataaccagcgtatccgcgactatggtcatgacaaactgaaagtctat
ggcatgggccgtgataaaagccatgaacattgggtgagcgtgatccgccagctgattcac
ctcggcctggtgacgcaaaatattgcccagcattctgccctacaactgacagaggctgcg
cgtccggtgctgcgcggcgaatcctctttgcaacttgccgtgccgcgtatcgtggcgctc
aaaccgaaagcgatgcagaaatcgttcggcggcaactatgatcgcaaactgttcgccaaa
ttacgcaaactgcgtaaatcgattgccgatgaaagcaatgtcccgccgtacgtggtattt
aacgacgcaaccttgattgagatggcggaacagatgccgatcactgccagcgaaatgctc
agcgttaacggcgttgggatgcgcaagctggaacgctttggcaaaccgtttatggcgctg
attcgtgcgcatgtcgatggcgacgacgaagagtag
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