Escherichia coli BL21(DE3): B21_04001
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Entry
B21_04001 CDS
T02096
Symbol
hfq
Name
(GenBank) RNA-binding protein that affects many cellular processes; homolog of mammalian Sm/Sm-like proteins, subunit of HF-I, host factor for RNA phage Q beta replication
KO
K03666
host factor-I protein
Organism
ebe
Escherichia coli BL21(DE3)
Pathway
ebe02024
Quorum sensing
ebe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ebe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B21_04001 (hfq)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
B21_04001 (hfq)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ebe03019
]
B21_04001 (hfq)
03036 Chromosome and associated proteins [BR:
ebe03036
]
B21_04001 (hfq)
Messenger RNA biogenesis [BR:
ebe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
B21_04001 (hfq)
Chromosome and associated proteins [BR:
ebe03036
]
Prokaryotic type
Nucleoid associated proteins
Other nucleoid associated proteins
B21_04001 (hfq)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hfq
LSM
Hfq_1
Motif
Other DBs
NCBI-ProteinID:
CAQ34518
LinkDB
All DBs
Position
4306802..4307110
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AA seq
102 aa
AA seq
DB search
MAKGQSLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAIS
TVVPSRPVSHHSNNAGGGTSSNYHHGSSAQNTSAQQDSEETE
NT seq
309 nt
NT seq
+upstream
nt +downstream
nt
atggctaaggggcaatctttacaagatccgttcctgaacgcactgcgtcgggaacgtgtt
ccagtttctatttatttggtgaatggtattaagctgcaagggcaaatcgagtcttttgat
cagttcgtgatcctgttgaaaaacacggtcagccagatggtttacaagcacgcgatttct
actgttgtcccgtctcgcccggtttctcatcacagtaacaacgccggtggcggtaccagc
agtaactaccatcatggtagcagcgcgcagaatacttccgcgcaacaggacagcgaagaa
accgaataa
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