Enterobacteriaceae bacterium FGI 57: D782_1167
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Entry
D782_1167 CDS
T02431
Name
(GenBank) ATP-dependent DNA helicase, RecQ family
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ebf
Enterobacteriaceae bacterium FGI 57
Pathway
ebf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ebf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D782_1167
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ebf03019
]
D782_1167
03400 DNA repair and recombination proteins [BR:
ebf03400
]
D782_1167
Enzymes [BR:
ebf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
D782_1167
Messenger RNA biogenesis [BR:
ebf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
D782_1167
DNA repair and recombination proteins [BR:
ebf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
D782_1167
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
DEAD
AAA_19
Helicase_C
UvrD_C
UvrD_C_2
ResIII
Viral_helicase1
DUF6681
Phage_rep_O
wHTH-PRTase_assc
Motif
Other DBs
NCBI-ProteinID:
AGB77188
UniProt:
L0LZW6
LinkDB
All DBs
Position
1201945..1207101
Genome browser
AA seq
1718 aa
AA seq
DB search
MSQSFSQFKGVVFDLEVVPSGDDQPPRIIMLGALCPDSGAELELKISGDPVPALQKLDRL
SEDASFVLGHNIIEHDLPILRKTYPSLSLHSLPAIDTLRLSPLAFPQNPYHRLVKDYKLI
RDSLNSPLSDCRSTWTLFNDQRQAFTQLNTVSREELLCYQTLLAPTPESDLAAFFVSLTG
HSALPLFEFKTLLPRILQESNPSLSRDLKVCRARLEHLLERDLQNPAQHLPLAYALAWLR
VSGGNSVLAPWVRHQFPEVQRLIYELRDVPCERADCQYCQTTHNPRHELKRYFGFLDFRY
EQPGKSLQHDIVLAGMRGQHVLAVLATGGGKSLCYQLPALNRFHRNGCLTVIISPLQSLM
KDQVDGLLERNIQCAAALNGLLTMPERADVLEKIQMGDVGILLVSPEQFRNKAFRRALSQ
RQVGAWIFDEAHCLSKWGSDFRPDYLYVSRYIREYTGENTLAQIGCFTATAKPDVLADIR
NHFKDTLNIDFAVFHGGHERTNLYFDVLPCVRAEKWQHTDRLLHEYLDNQNGGAVVFVSS
RKNAEELSDFLIGQEWPCKHFHAGLEPNTKTDIQDSFKAGQLRIIVATNAFGMGVDKADI
RLVVHADIPGSLENYLQEAGRAGRDQEDARCILLYDPLDIETQFGMSERSKLSIRDIQQI
LRKLRNESNRRKGNKLVITAGEILQDDSVDTTFSADERDAETKVVTAVAWLERGEYLKRE
ENHTQIFPGKLNLAEEEAEKRLLKAQIPQRRCEEYRAILRFLYNADVAERINTDQLMQLT
SLESEEIASALKQLEELGILINDSQITLYVRYGVAGASLQRLQNSLKLESALLKRLPELM
PDAEQGGWQDLHLPVLTMELKVLTEIEGLLPIHVLRLLRSLAQDHDADGHQRSTFELRQI
NRDYLKIRIKGRHPWTKIVSFGDVRRVLAGKFLEQMIAKLPAGLRGADLLIETSFGELLQ
IIENDLELQHIVSINNRRKVIEHVLLYLHRQEILTLNHGMTVMRRAMTIEVNKDDKRKTF
LKEDFLRLDEHYREKRIQVHVMREYAEQALENMAKALRLVLDYFTGSKQDFIKGYFTGRE
DVLKLATSEESWNSIIGALNPTQKDIVADDDDLNRLILAGPGSGKTRVIVHRIAYLLRVR
RIAASSIVALTFNRHAANEIRKRLLALVGADAYGVSIMTYHGMAMRLTGTRFERDAKIKE
DSLDQVLKDAVELLEGKRNIEGEDDLREQLLRGYRYILVDEYQDINEMQYRLVSALAGRH
AEEDGRLCIMAVGDDDQNIYAWRDTNNIYIERFREDYTALTSYLIENYRSSRNIIEASNQ
MISLNPGRMKEDNPVQINHARASLPYGGEWEVRDAQRQGRILRMRIDSGDAQQANVQAQA
AFMELRRLIALDNGGWNGCAIMARTHRYLVPVQALCEKYHIPYFMAADKDALPPITRQRS
FVAVIDFLRKIDSASPGEVWERIASGHLLKDAEWERFFHDAFEQLQGELGDSQLWGQAFI
DWMYDYVQEIRQQPKSGLYLGTVHSAKGLEFRHVVLLDGGWNTDKEDIDAERRLYYVGMT
RAEQTLTLCEFADGHSLSRCLVNNVAHDVFQGEPLPELDVNFQSLTLKEINIGFAGRHSA
DDRIHSRISKLQEGDVLTLKQDGAVYQILDSQGCVVGKHQVNLYRKSIFLTVKWRQSLSG
LLRMRERNTRVGSNLRVGKLLCHAEREESCRDMQDIFR
NT seq
5157 nt
NT seq
+upstream
nt +downstream
nt
gtgtcccaatctttttctcaatttaagggggtggtcttcgaccttgaagttgtaccatca
ggcgacgatcagccaccacgcattattatgctgggggcattatgtcccgactcaggggca
gagctggagttaaaaatttctggtgaccccgtccctgcgttgcagaaattagataggtta
tctgaagatgcgagtttcgttcttggtcataatattattgaacacgatcttcctatcctg
cgaaaaacttacccttctttatcactccattctttacctgcgattgatacattacgtttg
tcgccgttggcatttccacagaacccgtaccatcgtctggtgaaagattataaactcatt
cgcgatagcctgaattcaccgctatctgattgccgctctacctggacgctttttaacgat
cagcgtcaggcttttacacaattgaatacggtgagtcgagaggagttattgtgttatcaa
acattgttagcaccgacgcctgaatctgatctggctgctttttttgtctctttgacaggt
cacagtgccttacctctatttgaatttaagacgctccttccgcgaattttacaggagtcc
aatccttctttgtcacgagatttgaaggtctgccgggcacggctggaacacctgcttgag
cgggatttgcaaaatcctgcacaacatttgccgttagcttatgctctggcatggcttcgt
gtttcgggcggaaattctgttttagcgccctgggtaaggcatcagttccctgaagtgcag
cggctgatttacgagctgcgcgatgtcccttgtgagcgggccgattgccaatattgccag
acaacccataatccacgtcatgaacttaaacgttatttcggttttctcgattttcgttat
gagcagccgggtaagagtctgcaacatgacatcgtgcttgcgggtatgcgagggcaacat
gtcctggctgtcctggcaaccggagggggtaagtccttgtgctatcagttgccagccctc
aaccgttttcatcgcaatggctgcctgacagtgattatttctcccttacaatcgcttatg
aaggaccaggttgatgggcttcttgagcggaatattcaatgtgcggcggccctgaatggg
cttttgaccatgccggagcgtgcggatgtcctggaaaaaattcagatgggggatgtcggt
atcctgctggtatctccggaacaatttcgcaataaagcattcagacgagcgctcagccag
cggcaggttggggcatggatttttgatgaggcgcattgcctgtcgaaatggggcagcgac
ttccggcccgattatctctatgtttctcgttatattcgcgaatatacgggggaaaataca
cttgctcagataggctgctttactgcgaccgcgaaaccggatgtccttgctgatatacgc
aaccactttaaggataccttgaatatcgattttgcggttttccatggggggcatgagcgc
actaatctctattttgacgtattaccctgtgttcgggctgaaaaatggcagcacacggat
cgtttgctacatgagtatcttgataaccagaacggtggggcggttgtttttgtctcaagc
agaaagaatgcagaagagttatccgattttctgatagggcaagaatggccatgtaagcac
tttcatgccgggctggagcccaatacgaaaacagatattcaggatagttttaaagcgggt
caattgcgaattatcgttgcgacaaatgccttcggaatgggggtggataaggctgatatt
cggctggttgtgcatgctgatattcccggatcgcttgaaaactacttacaagaagcgggg
cgcgctggccgggatcaagaagatgcgcgctgtattcttttatacgatccactggatatc
gaaacgcaatttggcatgagtgagcgttcaaaattaagtatacgggatatccagcaaatt
ttacgtaagttgcgtaacgaaagtaatcgaagaaaaggaaataaacttgtgattactgcc
ggagaaatcttgcaggatgatagcgtagatacaactttttcggctgatgaacgagatgcg
gaaacgaaagtggttaccgccgtagcctggcttgagcgtggtgaatatcttaaacgtgag
gaaaatcatactcagattttcccaggaaaacttaatcttgctgaggaagaagcggaaaaa
cgcctgctgaaagctcaaataccgcagcgtcggtgtgaggaataccgcgctattctacgt
tttctctataatgcagacgttgcggagagaataaataccgatcagcttatgcaactgacc
agcctcgagtcagaggaaattgccagtgcgttaaagcaattggaagagttggggatatta
attaatgactctcagattacattatacgttcgttatggcgttgctggcgcctctctccaa
cgcctccagaactcgttaaaactggagtcagcgctgctaaaacgcttgcctgaattgatg
cccgatgccgaacagggcggatggcaggatttacacctgccagtacttaccatggagttg
aaagtcctcactgaaattgaagggttgcttccaatacatgttttgcgattattacggagt
ctggcgcaggatcatgatgcagatggtcatcagcgcagcacttttgaactgaggcagatt
aatcgagactaccttaaaatccgaattaaaggtcggcatccctggacgaaaattgttagc
ttcggtgatgtgaggcgtgtattggcaggtaagtttctcgagcaaatgatcgctaagcta
cccgccggattacgtggtgccgatctattaatcgaaacaagctttggcgaattacttcag
attattgaaaatgatctagagctacaacacatcgtttccattaacaatcgtcgtaaagtt
attgagcatgttttactctatcttcatcgccaggagattttaacgcttaaccatggcatg
acggtaatgcgccgggccatgaccatagaagtgaataaagatgataagcgcaagactttc
cttaaggaagattttttgcgtctcgatgaacattatcgtgaaaagcgtatacaggtacat
gtaatgcgcgaatacgcggaacaagccctggaaaatatggcaaaggcactacgcctggtt
ctggattacttcactggttccaaacaggattttataaaaggatattttactggtcgagaa
gatgtgctcaaactggcgaccagcgaagaatcctggaattcgattatcggggcgttaaat
ccaacgcaaaaagacattgtagctgatgatgacgatctcaatcgtctcatattagcaggc
cccggttccggaaagactcgagtgatcgtgcatcgcattgcttatctgctgcgtgtgcgt
cgtattgctgcttccagcatcgtcgcgttgacgtttaatcgccatgccgctaatgaaatt
cgtaagcgtttgttagcgctggttggcgcagatgcttacggtgtgagcatcatgacttat
catggtatggcgatgcgtttaaccggtactcgctttgagcgtgacgctaaaatcaaggaa
gattcccttgatcaggtattaaaggatgcggtcgagttactggaggggaaacggaatatt
gaaggggaagatgatcttcgggaacaactacttcgcggctatcgctatattctggttgat
gaatatcaggatattaacgaaatgcagtaccgattagttagcgcgcttgcaggccgtcat
gcggaagaagatggtcgtttatgtataatggcagttggcgatgatgatcaaaatatttac
gcatggcgcgacacaaataatatttatatagagcgtttccgtgaagattatacggcgtta
accagctacctgattgaaaattatcgttcctcgcgcaatattatcgaggcctctaaccaa
atgattagcctgaatcccgggcgtatgaaagaggacaatccggtacagattaaccacgcc
cgggcatctctgccttatggcggagaatgggaggtgcgcgacgcacagcggcaagggcgg
atcctgagaatgcggatcgactcgggagatgcgcagcaggcgaatgtacaggcacaagcg
gcctttatggagttaagaagacttatcgcgcttgataatggaggctggaacgggtgtgcg
attatggcacgaacacaccgctacttagtgccggttcaggcgttgtgtgaaaagtaccat
attccctattttatggccgcagataaagacgctcttcccccgattacccgtcaacgcagt
tttgttgcagttatcgatttcttacgcaaaatcgacagtgcatctcccggcgaggtttgg
gaacgcatcgcaagtggtcatttattgaaagacgcagagtgggaacgatttttccacgat
gcttttgaacaactgcaaggtgaactgggtgatagtcagctatgggggcaggcctttatc
gactggatgtatgactatgttcaggaaattcgtcagcaacctaaaagcgggctttatctt
ggaacggtgcattcggcaaaggggctcgagtttcgtcacgtcgtgcttttggatggtggc
tggaatactgataaagaggatatagacgctgagcgtcgtctgtattatgtcgggatgacc
agggctgagcaaactcttacattatgcgaatttgctgacggtcactcgttaagtcgttgt
ctggtaaacaatgttgcgcatgatgtatttcagggggaaccacttccagaactggatgtt
aattttcagtctctcacgttgaaggaaataaatattggttttgcagggcgtcactccgct
gacgatcggatacactcgcgcatcagtaagctccaggaaggtgatgttcttactctgaaa
caggatggagcggtataccaaattctggatagccagggatgtgtcgttggaaaacatcaa
gtaaatttataccgcaaatcgatttttctcactgtgaagtggcggcaatccttgtccggt
ttgttgaggatgagggagaggaatacaagagtgggatcaaatctgcgcgttgggaagttg
ttgtgccacgcggaaagggaagaaagctgtagggatatgcaggacattttccggtaa
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integrated database retrieval system
