Enterobacteriaceae bacterium FGI 57: D782_2642
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Entry
D782_2642 CDS
T02431
Name
(GenBank) transcription-repair coupling factor Mfd
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ebf
Enterobacteriaceae bacterium FGI 57
Pathway
ebf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ebf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
D782_2642
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ebf03400
]
D782_2642
Enzymes [BR:
ebf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
D782_2642
DNA repair and recombination proteins [BR:
ebf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
D782_2642
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
MFD_D3
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AGB78602
UniProt:
L0M5N0
LinkDB
All DBs
Position
2705220..2708666
Genome browser
AA seq
1148 aa
AA seq
DB search
MPELARYALPTKAGDQRQLGELTGAACATLVAEISERHDGPVILIAPDMQNALRLHDEIS
QFTDNLVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPMMQRGVLIVPVSTLMQRVCPH
SYLHGHALMMQKGQRLSRDALRAQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSEQPY
RLDFFDDEIDSLRVFDPDSQRTLEEVDSINLLPAHEFPTDKTAIELFRSQWRDKFDVKRD
AEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLDASATRFQADAQ
ARFENRGVDPMRPLLEPELLWLRPDELNSELKKWPRIQLKTEHLPEKAANTNLGFQPLPE
LAIQAQNKAPLDNLRRFLESFTGPVIFSVESEGRREALGELLARIKLSPKRILRLDEATD
TGRYLMIGAAEHGFIDTINNRALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIG
QPVVHLEHGVGRYAGMTTLEAGGIKGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENA
PLHKLGGDAWARARQKASEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFE
TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENNKQVAVLVPTTL
LAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILEQAAEGKIDILIGTHKLLQSDVKL
KDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP
ARRLAVKTFVREYDNLVVREAILREILRGGQVYYLFNDVENIQKTADKLAELVPEARIAI
GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR
GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG
EDQSGSMETIGFSLYMELLENAVDALKEGREPSLEDLTSQQTEVELRMPSLLPDDFIPDV
NTRLSFYKRIASAKSESELDEIKVELIDRFGLLPDAARTLLDIARLRQQAQKLGIRKLEG
NEKGGVIEFAEKNHVNPSWLIGLLQKQPQHYRLDGPTRLKFFQDLSERKARMEWVRQFMR
QLEENAIA
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaactagcccgttacgccctacccaccaaagctggcgatcagcgtcaactgggg
gaactgaccggtgcggcctgcgccacgctggtcgcggagatttccgaacgtcatgacggc
ccggttatcctgattgcgccggacatgcaaaatgccctgcgactgcacgatgaaatcagc
cagtttaccgataatctggtgatgaacctcgccgactgggaaacgctgccgtacgacagt
ttctcgccgcatcaggacattatttcgtcacgtctttcaacgctttatcagttgccgatg
atgcagcgtggcgtgttaattgtgcccgtaagcacgctgatgcagcgcgtttgcccgcac
agttatctgcacggccacgcattgatgatgcaaaaaggccagcgtctgtcacgcgatgcg
ctacgcgcgcagctcgatagcgcgggttatcgccacgtggatcaggtaatggaacacggc
gagtacgccacgcgcggtgcgctgctcgacctcttcccgatgggcagcgagcagccctat
cgtctcgatttcttcgatgatgaaatcgacagcctgcgcgtgttcgatccggacagccaa
cgcacgctggaagaagtcgactccattaatcttctgcctgcacacgagtttccgacggat
aaaactgccatcgagctgttccgcagccagtggcgcgataagttcgatgtgaagcgcgac
gccgaacacatctatcagcaggtgagtaaaggaacgctgcctgcgggcatcgaatactgg
cagccgctgttctttagcgaaccgttgcccccgctgttcagctacttcccggccaatacg
ctactggtcaataccggtgacctcgacgccagcgccacgcgcttccaggctgatgcgcag
gcgcgatttgagaatcgcggcgttgacccgatgcgcccgttactggagccggaactgctg
tggctgcgcccggacgagcttaacagcgagctgaaaaaatggccgcgcattcagcttaaa
acggagcatctgccggagaaagccgccaataccaatctgggcttccagccgctgccagag
ctggcgattcaggcgcaaaacaaagcgccgctggataacctgcgccgcttcctggaatcc
ttcaccggcccggtgattttctccgtagagagcgaaggccgccgggaagcgttaggcgag
ctgctggcgcgtatcaagctgtcgccaaaacgcatcctgcggctggatgaagccacggat
accgggcgctatctgatgattggcgcggcggaacacgggtttatcgataccataaacaac
cgggcgctgatttgtgaaagcgacctgctcggcgagcgcgtggcgcgacgtcgtcaggac
tcccgccgcaccatcaatccggataccttaatccgcaacctggccgaactgcatatcggc
cagccggtggtgcatctggaacacggggttggccgctacgccgggatgaccacgctggag
gccggtggcatcaaaggcgaatacctgatgctgacctacgccaacgatgccaaactgtat
gtgccggtctcctcgttgcacctgattagccgctacgcgggtggtgcggaagaaaatgcg
ccgctgcataaactgggtggcgatgcctgggcgcgcgcccgacagaaagcctctgagaaa
gtgcgcgatgtcgcagcagaattgcttgatatctacgcccagcgcgcggcgaaagaaggc
tttgcctttaaacacgatcgtgagcagtatcagcttttctgcgatagcttcccgttcgaa
accacgccggatcaggcgcaggccattaatgccgtgttaagcgatatgtgccagccgctg
gcaatggaccgtctggtgtgtggcgacgtgggctttggtaaaaccgaagtggcgatgcgc
gctgcattcctcgctgttgaaaacaacaaacaggtcgcggtgctggtgccgaccaccctg
ctggcgcaacagcactatgacaacttccgcgaccgcttcgccaactggccggtacgcatt
gaaatgctctcccgcttccgtagcgccaaagagcagacgcagattctggaacaagctgcc
gagggaaaaatcgatattctcatcggtacccataaactgctgcaaagcgacgtaaagttg
aaagatttgggtctgctgattgtcgatgaagagcaccgcttcggcgtgcgtcacaaagag
cgcattaaggcgatgcgcgccgatgtggatatcctgacactcaccgctacgccaatcccg
cgtacgctgaatatggcgatgagcggcatgcgcgatttgtcgattattgccacgccgccg
gcgcgccgactggcggtgaaaaccttcgtgcgtgaatacgataacctggtggtacgtgaa
gccattctgcgtgaaattctgcgtggcggtcaggtctattacttgttcaatgacgtcgaa
aatatccagaaaacagcggataaactggccgaactggtgccggaagcgcgtatcgcgatt
ggccatggtcagatgcgcgaacgcgaacttgaacgggtgatgaacgatttccaccatcag
cggtttaacgttctggtgtgtaccaccatcatcgaaaccgggatcgacattccaaccgcc
aacaccattattattgagcgcgcggatcacttcggcctggcgcagctgcaccagttgcgt
ggccgcgtggggcgttcgcatcaccaggcctatgcctggttgctgaccccgcatccaaag
gcgatgaccaccgatgcgcagaaacgtctggaagccattgcttcgctggaagatctcggc
gcaggctttgcgctggcgacccacgaccttgaaattcgcggcgcgggggaactgcttggc
gaagaccagagcggttcaatggaaaccattggcttctcgctctatatggaacttctggaa
aatgccgttgatgcgctgaaagaaggccgtgagccgtcgctggaagatctcaccagccag
caaacggaagtggagctgcgtatgccgtcgctgctgccggatgatttcattcctgatgtg
aatacgcgtctctccttctacaagcgtatcgccagtgcgaaaagcgaaagcgagctggat
gaaatcaaagtggaactgattgaccgctttggcctgttgccggatgcggcgcgcacgctg
ctggatatcgcgcgtctgcgtcaacaggcgcagaaactgggtattcggaagctggaaggc
aatgagaaaggcggcgtgattgagttcgcggagaaaaaccacgtcaatccgagctggctg
attggtctgttgcagaaacagccacagcactatcgtctggacggcccgacgcggctgaag
ttcttccaggacctgagcgagcgtaaagcgcgcatggaatgggtgcgacagtttatgcgt
cagttagaagagaacgccatcgcgtaa
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