Enterobacter bugandensis: FAI37_04490
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Entry
FAI37_04490 CDS
T05993
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ebg
Enterobacter bugandensis
Pathway
ebg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ebg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FAI37_04490
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ebg03019
]
FAI37_04490
03016 Transfer RNA biogenesis [BR:
ebg03016
]
FAI37_04490
Enzymes [BR:
ebg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
FAI37_04490
Messenger RNA biogenesis [BR:
ebg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FAI37_04490
Transfer RNA biogenesis [BR:
ebg03016
]
Prokaryotic type
tRNA degradation factors
FAI37_04490
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
TFIIE_beta
Rho_RNA_bind
YqfQ
Motif
Other DBs
NCBI-ProteinID:
QCE26743
LinkDB
All DBs
Position
complement(934859..937300)
Genome browser
AA seq
813 aa
AA seq
DB search
MSQDPFQEREAEKYANPIPSREFIIEHLTKREKPANREELAVELNIEGEEQIEALRRRLR
AMERDGQLVFTRRQCYALPERLDLLKGTVIGHRDGFGFLRVEGRKDDLYLSSEQMKMCIH
GDQILAQPLGADRKGRREARVVRVLVPKTSQIVGRYFTDAGVGFVVPDDSRLSFDILIPP
EEVMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDMALRTHEIPYVWPKA
VEEQIENLREEVPEESKAGRVDLRSLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA
DVSYYVRPHTPLDNEARSRGTSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTIS
TKGRLTGYKFYEAVMSSHARLTYTKVWHMLQGDQDLREQYAPLVKHIEELHNLYKTLEQA
REERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEP
ALFRIHDKPTTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESISDRPDAEMLQTMLL
RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLSLHRAIKYLLAQEQGHKGNTTETG
GYHYSMDEVLQLGQHCSMTERRADEATRDVADWLKCDFMLDQVGNVFKGVIASVTGFGFF
VRLDELFIDGLVHVSSLDNDYYRFDQVGQRLIGESGGQTYRLGDRVEVKVEAVNMDDRKI
DFSLISSERAPRNVGKTERERAKKGGNGKASGKRRQAGKKVNFEPDSAFRGEKKQKPKAA
KKEARSAKKPSAKTQKIAAATKAKRAAKKKQAE
NT seq
2442 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaagatcctttccaggaacgcgaagccgaaaaatacgcgaatcctatccccagc
cgcgagttcatcattgaacacttaacaaaacgcgaaaaacccgccaatcgtgaagaactt
gccgttgaattaaatattgaaggtgaagagcaaattgaagcccttcgccgccgcctgcgc
gcgatggagcgtgacgggcaactggtctttacccgccgccagtgctacgcgctgccggaa
cgcctcgatctgctgaaagggaccgtcattggtcaccgcgatggctttggcttcctgcgc
gtggaaggccgtaaggacgacctttacctctcatccgaacagatgaaaatgtgcatccac
ggcgaccagatcctggcgcagccgctgggtgcagaccgtaaaggccgccgcgaagcgcgc
gtggtgcgcgtgctggtgccaaaaaccagccagattgtgggccgctactttaccgatgcg
ggcgtaggcttcgtggtgccggacgacagccgtctgagcttcgatattctgatcccacct
gaagaggtgatgggcgcgcgtatgggctttgtggtggtggttgaactcacccagcgtccg
acccgtcgcaccaaagcggtcggtaaaatcgtcgaagtgctgggcgataacatgggcacc
ggcatggccgtcgatatggcgctgcgtacccatgaaattccgtacgtctggccgaaagcg
gtcgaagagcagatcgaaaacctgcgcgaagaagtaccggaagagtccaaagcgggccgt
gtggatctccgctccctgccgctggtcacgatcgacggtgaagacgcccgcgacttcgat
gacgcggtctattgcgagaaaaaacgtggcggcggctggcgtctgtgggttgctatcgct
gacgtaagctattacgttcgtccgcacacgccgctggataacgaagcgcgcagccgcggt
acctcggtctacttcccgtctcaggttgtaccgatgctgccggaagtgctctccaacggc
ctgtgctccctgaacccgcaggttgaccgtctctgtatggtatgtgagatgaccatctcc
accaaagggcgcttaacgggctacaaattctacgaagcggtaatgagctcgcacgcgcgt
ctgacctataccaaggtctggcatatgttgcagggcgaccaggaccttcgcgagcagtac
gcgccgctggttaaacacattgaagagctgcataacctctacaaaacgctggagcaggcg
cgcgaagagcgcggcgggatctcctttgagagcgaagaagcgaagtttatcttcaacgcc
gagcgccgcattgagcgtatcgaacagacccagcgtaacgatgcgcacaagctgatcgag
gagtgtatgattctggcgaatatctcggcggcacgcttcgttgagaaagccaaagagcct
gcgctgttccgtattcacgataagccgaccacggaagccattacgtcgttccgctccgtg
ctggctgagctcggcctggagctgcctggcggtaataagcctgagccacgcgattacgcc
gaactgctggaatccatcagcgatcgtcctgacgcggaaatgctgcagacgatgctgctg
cgctccatgaagcaggcgatttacgatccggaaaaccgggggcacttcggcttggcgctg
cagtcttacgcgcactttacctcgccgatccgtcgctatccggatctgtcactgcaccgt
gcgatcaagtatctgctggcgcaggagcagggccacaaaggcaacacgaccgaaaccggc
ggctatcactactccatggacgaagtgctgcaactgggtcagcactgttccatgaccgag
cgccgtgcggatgaagcgacgcgcgacgtggcggactggctgaagtgtgactttatgctg
gatcaggtgggcaacgtctttaagggcgtgattgccagcgtgaccggctttgggttcttc
gttcgtctggatgagctgtttatcgacggtctggtgcacgtctccagcctggataacgac
tactaccgcttcgaccaggtcggccagcgtctgattggcgaatcaggcggccagacctac
cgtctgggcgatcgcgtggaagtgaaggtcgaagccgtgaatatggacgaccgtaaaatc
gacttcagcctgatctccagcgagcgcgcaccgcgtaacgtcggtaaaaccgagcgtgaa
agggcgaaaaaaggcggaaacggcaaagcgagcggtaaacgtcgccaggcgggcaaaaag
gtaaacttcgagccggacagcgccttccgcggcgagaagaaacagaagccaaaggcggcg
aagaaagaggctcgctcagcgaaaaagccttccgcgaagacgcagaaaatcgctgccgcg
acaaaagcgaagcgcgcagccaagaaaaagcaggcggagtaa
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