Enterobacter bugandensis: FAI37_20905
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Entry
FAI37_20905 CDS
T05993
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ebg
Enterobacter bugandensis
Pathway
ebg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ebg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FAI37_20905
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ebg03400
]
FAI37_20905
Enzymes [BR:
ebg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FAI37_20905
DNA repair and recombination proteins [BR:
ebg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FAI37_20905
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
MFD_D3
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QCE29742
LinkDB
All DBs
Position
4334650..4338096
Genome browser
AA seq
1148 aa
AA seq
DB search
MPEHYRYSLPVKAGDQRQLGELTGAACATLVAEIAERHPGPVVLVAPDMQNALRLHDEIR
QFTDSLVFSLADWETLPYDSFSPHQEIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPH
SYLHGHALVMKKGQRLSRDTLRDQLDGAGYRHVDQVMEHGEYATRGALLDLYPMGSDQPY
RLDFFDDEIDSLRVFDADTQRTLEEVESINLLPAHEFPTDKTAIELFRSQWRDRFDVKRD
AEHIYQQVSKGTLPAGIEYWQPLFFSEPLPALFSYFPANTLIVNTGDIDASASRFESETR
ARFENRGVDPMRPLLPPEAMWLRTDELNAELKRWPRMQLKTDSLADKAANTNLAFRTLPE
LAVQAQQKSPLDNLRKFLESFTGPVVFSVESEGRREALGELLGRIKVAPKRILRLSEATG
NGRYLMIGAAEHGFIDTLNNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHPG
QPIVHLEHGVGRYQGMTTLEAGGIKGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENA
PLHKLGGDAWTRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDKEQYQLFCDSFPFE
TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENNKQVAVLVPTTL
LAQQHFDNFRDRFANWPVRIEMLSRFRSTKEQTQILEQASEGKIDILIGTHKLLQSDVKW
KDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP
ARRLAVKTFVREYDNLVVREAILREVLRGGQVYYLYNDVENIQKAADRLAELVPEARVAI
GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR
GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG
EDQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDV
NTRLSFYKRIASAKNENELEEIKVELIDRFGLLPDAARNLLDIARLRQQAQKLGIRKLEG
NEKGGVIEFAEKNHVNPMWLIGLLQKQPQHFRLDGPTRLKFTQELTERKTRMDWVRNFMR
QLEENAVA
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaacactatcgttattccttgcccgtcaaagcgggcgaccagcgccagctgggt
gaactcacgggcgcggcgtgcgccacgctggtggcagaaatcgctgagcggcaccctggc
ccggtggtgctggttgccccggatatgcaaaacgccctgcgcctgcacgatgaaatccgc
cagttcaccgatagcctggtgttcagcctggccgactgggaaacgctgccgtatgacagt
ttctccccgcatcaggagatcatctcctcgcgcctgtcgacgctatatcaactcccgacc
atgcagcgcggcgtgctgattgtgccggtgaataccctgatgcagcgcgtctgcccgcac
agctatctgcacggccacgcgctggtgatgaaaaaaggccagcgcctgtctcgcgacacc
ctgcgagaccagcttgacggtgccggatatcgccatgtcgatcaggtcatggagcacggg
gaatatgccacccgcggcgcgctgctcgacctttacccgatgggcagcgaccagccgtat
cgtctggatttctttgatgatgaaatcgatagcctgcgcgtgttcgatgccgacacccag
cgcacgctggaagaggtggaatccatcaatttactgcctgcccacgagttcccgacggac
aaaaccgccatcgagctgttccgcagccagtggcgcgacaggttcgacgtaaagcgtgat
gcagaacatatttatcagcaggtcagcaaaggtacgctcccggccggaatcgaatactgg
cagccgctgttcttcagcgagccgctgcccgccctgttcagctacttcccggcgaatacg
ctgattgtgaacactggcgatatcgacgccagcgccagccgctttgaaagcgaaacccgc
gcgcgcttcgaaaaccggggcgttgacccgatgcgtccgcttctgccgccggaagcgatg
tggctgcgcaccgacgaactcaacgccgagctgaagcgctggccgcgcatgcagctgaaa
accgattcgcttgccgataaggccgccaacaccaacctcgccttccgcacgctgccggag
ctggccgttcaagctcagcagaaatcgccgctggataatctgcgcaagttcctggaatcc
tttaccgggccggtggtgttctccgttgagagtgaaggccgccgcgaggcgctcggtgag
ctgctgggacgcattaaggtggcgccgaagcgcattcttcgcctgagcgaagcaaccgga
aacggtcgttacctgatgattggcgccgccgagcacgggttcattgacacgctcaacaac
ctggcgctgatttgcgaaagcgacctgctgggcgagcgcgtcgcgcgccgccgtcaggac
agccgtcggaccatcaacccggacacgctgatccgcaacctggccgagctgcatccaggc
cagccgattgttcacctggagcacggcgttggccgctatcaggggatgaccacgctggaa
gcgggcggtatcaaaggtgagtacctgatgctgacctacgccaacgacgccaaactctat
gtaccggtctcgtcgctgcacctgatcagccgctatgcgggcggcgcggaggaaaatgcg
ccgctgcacaagctgggcggcgacgcctggacgcgtgcacgccagaaagcggcggaaaaa
gtgcgcgacgtggcggccgaactgctggatatctacgcccagcgcgcggccaaagagggc
ttcgcctttaagcacgacaaagaacagtaccagctcttctgcgacagcttcccgtttgaa
accacgccggatcaggcccaggccattaatgccgtgctgagcgacatgtgccagccgctg
gcaatggaccgcttagtctgcggcgacgtcggcttcggtaaaaccgaagtggcgatgcgc
gccgccttccttgcggttgaaaacaacaagcaggtggcagtgctggtgccgaccaccctg
ctcgcccagcagcacttcgacaacttccgcgaccgcttcgccaactggccggtacgcatc
gagatgctgtcgcgttttcgcagcaccaaagagcagacgcagatcctggagcaggcaagc
gaaggcaagatcgatattctgatcggtacccacaagctgctgcaaagcgatgtgaagtgg
aaagatctggggctgctgatcgtcgacgaagagcaccgcttcggggtgcgccataaagag
cgcatcaaagcgatgcgcgctgacgtcgacatcctgaccctgaccgcgacgccgatcccg
cggacgctgaacatggcgatgagcggcatgcgcgatctgtcgattatcgccacgccgccg
gcgcgtcgtctggcggtaaaaacctttgtccgcgagtacgacaatctggtggtgcgtgag
gccattctgcgtgaagtgctgcgcgggggtcaggtctattacctgtataacgacgtggaa
aacatccagaaagcggccgacaggctggcggaactggtaccggaggcgcgtgttgctatc
ggtcacggacagatgcgcgaacgcgagctggagcgggtgatgaacgacttccaccaccag
cgctttaacgtgctggtgtgtaccaccatcatcgaaaccgggatcgacattccaacggcg
aacacgattatcatcgaacgcgcggatcacttcggcctggcccagcttcaccagctgcgc
ggccgcgtcgggcgttcgcaccatcaggcctacgcctggctgctgacaccgcatccgaaa
gcgatgaccaccgacgcgcaaaagcgcctcgaagctatcgcctcgctggaagacctcggc
gcaggcttcgcgctggccacgcacgacctggagatccgcggcgcgggtgaactgctgggt
gaggaccagagcggctccatggagaccatcggcttctcgctctatatggaactgctggaa
aacgcggtggacgccctgaaggccgggcgcgagccgtcgctggaagatttgaccagccag
caaaccgaggtcgagctgcgaatgccttccctgctgccggatgatttcattccggacgtg
aatacccgcctgtcgttctacaagcgcatcgccagcgcgaagaatgagaacgagctggaa
gagattaaagtggagctgatcgaccgcttcggcctgctgccagatgctgcgcgtaacctg
ctggatatcgcgcgcctgcgccagcaggcgcagaagctgggcattcgcaagcttgagggc
aacgaaaaaggcggcgtcattgaatttgccgagaagaaccacgtcaacccgatgtggctg
atcggcctgctgcaaaaacagccgcagcacttccgtcttgatggcccgacgcgactgaaa
tttacccaggagctgacggagcgcaaaacgcgcatggactgggtgcgtaactttatgcgt
cagctggaagagaacgctgtcgcgtaa
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