Endosymbiont of Bathymodiolus septemdierum: BSEPE_0439
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Entry
BSEPE_0439 CDS
T04606
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ebh
Endosymbiont of Bathymodiolus septemdierum
Pathway
ebh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ebh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BSEPE_0439 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ebh03021
]
BSEPE_0439 (rpoC)
03400 DNA repair and recombination proteins [BR:
ebh03400
]
BSEPE_0439 (rpoC)
Enzymes [BR:
ebh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BSEPE_0439 (rpoC)
Transcription machinery [BR:
ebh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BSEPE_0439 (rpoC)
DNA repair and recombination proteins [BR:
ebh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BSEPE_0439 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
BAS67451
UniProt:
A0A0P0UR77
LinkDB
All DBs
Position
418137..422336
Genome browser
AA seq
1399 aa
AA seq
DB search
MQDLLNILKSQNKEQDFDAIRVGLASPEKIRSWSYGEVKKPETINYRTFKPEREGLFCSK
IFGPMKDFECLCGKYKRMKFRNVVCEKCGVEVTLSKVRRERMGHIDLAAPVAHIWYLKSL
PSRLGLLMDMTLKDIERVLYFEAFLVTDPGNTPLVHKQLLTEEMYFDALDEFGDDEFEAK
MGAEAIQDVLKEMQLEKEAANLREDSLNTKSQTKLKKYNKRLKLINSLIQSDNKPEWMVL
NVLPILPPDLRPLVSLDGGRFATSDLNDLYRRVINRNNRLARLLELDAPEIIVRNEKRML
QEAVDSLIDNGRRGRAVMGNNRRPLKSIADMIKGKQGRFRQNLLGKRVDYSGRSVIVCGP
YLKLHQCGLPKKMALELFKPFVYNRLISQSLASTIKAAKKMVESEEAIVWDILEKVVHQH
PVMLNRAPTLHRLGIQAFEPLLIEGKAIQLHPLVCGAFNADFDGDQMAVHVPLSEEAQLE
ARTLMLASSNVLHLASGEPIIVPSQDVILGLYYMTRDMINQKGEAMIFASPVEALNAYES
GVTTLHAKIKLRIQDYKKVDKKYEPTSTRIVDTTVGRAIFSRILPKGLSFDLINKAISKK
VVSNLIHVCYQTQELKDTVVFADQMMYMGFQYSTRSGISFCSNDMTIPDSKAGTIRDAEM
QVKEVQKQYAQGVVTDGERYNKVIDIWSRTSETVAKAMMDEIGFEDFTNADGKTEKLPSF
NSVYMMADSGARGSPAQMRQLAGMRGLMAKPDGSIIETPITSNFREGLNNMQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVAQDLVVNEDDCGTENGLMMKATIEGGNIVQTLGAAV
LGRVVAEDVMMPDTKKVLLPKGHLVTLEDSDEINEVGVESIKARSAITCDARYGVCASCY
GNDMARGHKIGVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASASTAVSSINIDNDGVVH
FENLRSITNENGDLVVISRSSEVTIRNAKGQEVERYKIPYGAIAHVKDGGKVKAKDKIAD
WDPHTHPIISEQAGRVVFVDFVEGVTVNKNSDPLTGLTFFEMIKETERLSAAKGLKPMIK
MVDAKDSEIVLSTHYLPSEVKINLEDGQVITAGEVLAKIPKDQSKTSDITGGLPRVADLF
EARKAKDHSLLAEATGVISFGNPTKSKDRLIITSAEGEAIEMMIHKWRQINVFDGETVEK
GDVISDGPSNPHDILRLLGVEALANYVVKEVQNVYRLQGVNISDKHIEVIVKQMLRKVEV
LDTGDSPFVNGETAEYARVIETNRQLTAQGKNPIIYQRLLMGITKASLATESFISAASFQ
ETTRVLTEASTTGRVDNLLGLKENVIVGRLIPAGTGFVHHQERRAKRREKSVMQTAEAEA
ALSAELSEVDAETESTAEE
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
atgcaagatttattaaatattttaaagagtcaaaataaagaacaagattttgacgcgatt
agagttggtttggcgtctcctgagaagattcgttcatggtcttatggcgaagtaaagaaa
cctgaaaccatcaattacagaacttttaagcccgaacgagagggtttgttttgttctaag
attttcggaccaatgaaagattttgaatgtttgtgtggtaaatacaaacgcatgaagttc
cgcaatgtggtttgtgaaaaatgtggcgttgaggttactttgtctaaagtacgccgtgag
cgaatgggtcatattgaccttgcagcacccgttgcacatatttggtacttaaagtcactg
ccgtcgcgtcttggattattgatggacatgacattgaaagatattgaacgcgttttgtat
tttgaagcctttctagtcacggatccaggtaatacacctttagttcataagcagttatta
acagaagaaatgtattttgatgccttagatgaattcggtgatgatgagtttgaagcaaaa
atgggcgcagaagctatccaagatgttttaaaagaaatgcagcttgaaaaagaagcggca
aatcttcgtgaagacagcctaaatactaagagtcaaacaaaacttaagaaatacaacaag
cgtttaaagttaattaattcccttattcagtcggataataaacctgagtggatggtgtta
aatgtcttgccaatcctaccaccagatttacgcccattggtatcattggatgggggtcgt
tttgcgacttctgatttgaacgatttgtatcgtcgtgttatcaatcgtaataaccgttta
gcgcgtttattagaattagatgcccctgaaatcatcgtacgcaatgaaaagcgtatgttg
caagaagcggtagattcattaattgataacggtcgtcgtggtcgtgcagtgatgggtaat
aaccgtcgtccgttgaagtcaattgcagatatgattaaaggtaagcaaggtcgtttccgt
caaaacttactcggtaaacgcgttgactattcaggtcgctcagtgattgtttgtggtcca
tatcttaaattacaccaatgtggcttaccgaagaaaatggcgttagaattattcaagcct
tttgtttataaccgtttgatttctcaaagcttagcatcaaccattaaagcagcgaagaaa
atggttgaaagtgaagaggccatcgtttgggatattttagaaaaagtcgtgcaccagcat
ccagtgatgttgaatcgtgcaccaacgctacaccgtttaggtattcaagcgtttgaaccg
ttattaattgaaggcaaagccattcaattacaccctttagtttgtggtgcgtttaacgcg
gatttcgatggcgaccaaatggcagtgcatgtacctttatctgaagaagcacaattagaa
gcaagaacactaatgttggcctctagtaatgttttgcaccttgccagtggtgaacctatc
attgtaccttcacaagatgttattttgggcttgtactatatgacgcgtgatatgatcaat
caaaaaggtgaggctatgatttttgctagtccagttgaagcgttaaatgcttatgagtca
ggtgtaacgacattacatgcaaagattaaattgcgtattcaagactataaaaaagttgat
aaaaaatatgagccaacttccacacgcattgttgacacaactgtgggtcgtgcaattttc
tcaagaatcttaccaaaaggattgtcgtttgacttgattaacaaggcgattagtaaaaaa
gtggtttctaacttaatccatgtttgttatcaaacacaagagttaaaagacaccgttgtt
tttgctgatcagatgatgtatatgggtttccaatactcaaccaggtcaggtatttcattt
tgttcgaatgatatgaccattccagattctaaagcaggtactattcgtgatgcagaaatg
caagtgaaagaagtacaaaagcagtacgcacaaggtgtggtgacagatggtgaacgctat
aacaaggtcattgatatttggtcgcgtacttctgaaaccgttgcgaaggcgatgatggac
gaaatcggttttgaggactttaccaatgccgatggcaaaactgaaaaattaccttctttt
aactcggtttatatgatggccgattctggtgcacgaggctctcctgcacagatgcgtcag
ttggcaggtatgcgtggtctaatggctaagccagatggttcaattattgaaaccccaatt
acttcaaatttccgcgagggtttgaataatatgcaatactttatttcaacacatggcgca
cgaaaaggtttggctgatacagcattgaaaactgcgaactcaggttatttgacgcgtcgt
ttggtcgatgttgcacaagatttggttgttaacgaagacgattgtggtacagaaaatggt
ttaatgatgaaggcaacgattgaaggcggcaacattgtacaaactttaggtgctgcagta
cttggtcgtgttgtggctgaagatgtaatgatgccagatactaagaaagtattattgcct
aagggtcatttagtgactttagaagattcagacgaaatcaatgaagttggtgtggagtct
atcaaggcgcgttctgcgattacttgtgatgctcgttatggcgtttgcgcctcttgttat
ggtaatgacatggctcgcggacataagattggcgttggtgaggcagttggtgttattgca
gcgcagtcaatcggtgagccaggtacacagttaaccatgcgtacttttcacattggtggt
gcagcttctgcatcaacagcggtcagtagtattaacattgacaatgatggtgtggtgcat
tttgaaaacttaaggtcaattactaacgaaaatggcgatttagtggttatttctcgttct
tctgaggtaacgattcgtaatgctaaaggtcaagaggttgagcgctataagattccttat
ggtgcgattgcccatgttaaagatggtggcaaagttaaggcaaaagataagattgctgac
tgggacccgcatacgcatccaattatttctgagcaagcaggtcgtgttgtgtttgttgat
tttgttgaaggtgttactgttaacaaaaactctgatccattgacaggattaacttttttt
gaaatgattaaggaaacagaaagattatcagcagcaaaaggtttaaagccaatgattaag
atggtggatgcaaaagattctgaaatcgttttatcgacacactacttaccgtcagaagtt
aagattaatttagaagatggtcaggtgattactgcaggtgaagtgcttgcgaagattcca
aaagaccaatctaagaccagtgatattactggtggactgccgcgcgttgctgacttgttc
gaagcgcgtaaagctaaggaccactcactgcttgcagaagcaacaggtgttattagtttt
ggtaacccaactaagtctaaagaccgtttaatcattacctctgcagaaggtgaagcgata
gaaatgatgattcacaaatggcgtcagattaatgtctttgatggtgaaacggttgaaaaa
ggtgatgtaatttctgacggaccgtctaatccgcacgatattcttcgtctattaggcgta
gaggcgttggcgaactatgtggttaaggaggttcaaaatgtttatcgcctgcaaggtgtg
aatatttctgataagcatattgaagtcattgttaagcaaatgttgcgcaaagtagaggtg
cttgatacgggtgattcaccgtttgttaatggcgaaactgctgagtatgcgcgcgtgatt
gagaccaatagacaattaaccgcacaaggtaaaaatccaattatttatcaaagattgttg
atgggtattactaaagcttcattggcaactgagtcgtttatttctgcggcatcattccaa
gaaaccacgcgtgtactaacggaagcgtcaacgacaggtcgtgttgataacctattgggc
ttaaaagagaatgttatcgtaggtcgtttgattccagcgggaacaggctttgttcatcat
caagagcgtcgtgctaagcgcagggaaaaatctgtgatgcaaactgcagaagcagaggca
gcattgtcagccgagttgagtgaagtggatgctgaaacagagtctactgctgaagaatag
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