Endosymbiont of Bathymodiolus septemdierum: BSEPE_0555
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Entry
BSEPE_0555 CDS
T04606
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ebh
Endosymbiont of Bathymodiolus septemdierum
Pathway
ebh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ebh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BSEPE_0555 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ebh03019
]
BSEPE_0555 (rne)
03009 Ribosome biogenesis [BR:
ebh03009
]
BSEPE_0555 (rne)
Enzymes [BR:
ebh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
BSEPE_0555 (rne)
Messenger RNA biogenesis [BR:
ebh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BSEPE_0555 (rne)
Ribosome biogenesis [BR:
ebh03009
]
Prokaryotic type
rRNA processing factors
BSEPE_0555 (rne)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
BAS67562
UniProt:
A0A0P0UQT6
LinkDB
All DBs
Position
complement(529866..532070)
Genome browser
AA seq
734 aa
AA seq
DB search
MNQILINATHSEEIRVAIVNNKKLTDLNIETSLNQKNKGNIYKGKISRVEQSLEAAFVDY
GKERQGFLPFKEITEALRANATAKGDKLTISDVLKEGQEIIVQVEKEERSNKGAALSTFI
NLAGAYMILTPNNAKSHGISRQIGASDRSELKEIINKITMPENSGLIIRTAGAGKSLEEL
QWEVDYLSELWGSINTAAENRKAPFLIYQESDIVIRTLRDYLRKDTDSVIIDDLATFQNA
KEFVSFVLPHYLDRVKQFDASEHSLFNHMGIEAQVKSVFNREVSLRSGATIVFDPTEALT
AIDINSARATKGHDIEETAYNANLEAAKEIAIQLQLRDIGGLVVIDFIDMASEEHKRSIE
KIMEKATSSDRARIQIGTISRFGLLEMSRQRLMSSVTESVEKTCSACDGRGTTPTVPSLA
LNILRQLEDGCNASNQTQRLTIQSSVDVITYLLNEKRNDVNHLEEKHSIKITLLPNPYMQ
FPDFTINKQKGDKKSHHKSYQGISKPQNTLSDNGLSTDRETPEINTNHPTTRVPEHKKSV
VKKPSTSLWSKLKSLFSANKKKNQTNKKRNNKNRNRNRNQNRNRNQNKQQQRQKPKNNNQ
PKQGKSQNKGNPQQKKLNDANPKPQKQVKSKPQPKPVTKKEVKPKDNINSEVKVEKSAIK
IENPNKPVAVKEKKVNPKDKVKTEKVVIKMENPDKPVEIKKKEIKKEIKPVVVKKETKVN
GNKIDASPDADGNK
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaaattttaatcaatgcaacgcactcggaagaaatcagagttgcgattgtcaac
aataaaaaactcaccgacttaaacatagaaaccagccttaatcaaaaaaacaaaggcaat
atttataaaggtaaaatctcccgtgttgagcaatccctagaagccgcttttgtcgattac
ggcaaagaaagacaaggctttttaccttttaaagaaattaccgaagcattgcgtgcaaat
gccactgctaaaggcgataaattaacaatttctgatgttctaaaagaaggtcaagaaatt
atcgttcaagtagaaaaagaagaacgaagcaacaaaggtgcagcactcagtacctttatt
aacttagctggcgcttacatgattttaacgccaaacaacgccaagagccacggaatttca
agacaaatcggcgcttctgataggtcagaactcaaagaaattataaacaaaattaccatg
ccagaaaattctggtttaataatccgtactgcgggtgctggaaagtctttagaagagtta
cagtgggaggtagattacctatcagaactgtggggttcaattaataccgctgcagaaaat
cgcaaagcccctttcttaatttaccaagaaagtgacatcgttattcgcaccctgcgtgac
tatttgagaaaagacacagatagtgtgattattgacgatttagccactttccaaaatgcc
aaagaattcgtgagtttcgtattgccgcactacttagatcgtgttaagcaatttgacgca
tctgaacattcgttgtttaaccacatgggcattgaagcgcaagttaaaagcgtctttaat
cgtgaagtttctttgcgttcaggtgcaacaattgtatttgacccaactgaggcgttaact
gcgattgatatcaactctgcccgtgcaaccaaaggtcatgatattgaagaaacggcttat
aacgccaacttagaagcagcaaaagagattgccatacagttacaattgcgtgatattggt
ggtttagtagtgattgactttattgacatggcttctgaagaacacaaaaggtcaattgaa
aagatcatggaaaaagccaccagctcagaccgtgcacgcattcaaattggtacgatttct
cgctttggtttgttagaaatgtcaagacagcgtctgatgagttcagtcaccgaatcagta
gaaaaaacttgctccgcttgtgatggtcgtggcactacgccaaccgttccaagtttggca
ctcaacatcctcagacaactagaagacggctgtaacgcctctaatcaaacacagagatta
acaattcaatctagcgttgatgttatcacttatttattaaatgaaaagcgtaatgatgtc
aatcatttagaggaaaaacatagcattaaaatcaccttattgcctaatccttatatgcag
ttcccagattttactattaataagcaaaaaggcgataaaaaatcacaccataagagttat
caaggtatttctaagccacaaaatacgctttctgataatggcttaagtaccgatagagag
acaccagagattaacaccaaccaccctacgacacgcgtccctgaacataaaaaatcagtt
gttaaaaaaccttcaacttcattatggagtaaacttaagtcgttatttagcgccaacaag
aagaaaaatcagacaaataaaaagcgtaataataaaaatcgaaatagaaacaggaatcaa
aacagaaatagaaatcaaaataaacagcaacaacgccagaagccgaaaaataacaatcaa
ccaaaacaaggcaagtcacaaaataaaggtaaccctcaacagaaaaaattgaatgacgca
aaccctaaaccacaaaagcaagtcaagtcaaagcctcagccaaaacctgtgactaaaaaa
gaagttaaaccaaaagataatattaactcagaagttaaggttgaaaaatctgctataaaa
atagaaaatcccaataaaccagtagcagtaaaggaaaaaaaggtcaatccaaaagataaa
gttaagactgaaaaagtcgttataaaaatggaaaaccctgataagccagtagaaataaag
aaaaaagagattaaaaaggagattaagccagtcgtcgttaaaaaagaaaccaaagttaat
ggcaacaagatcgacgcaagccctgacgctgacggcaacaaatag
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