Endosymbiont of Bathymodiolus septemdierum: BSEPE_1297
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Entry
BSEPE_1297 CDS
T04606
Symbol
rnb
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
ebh
Endosymbiont of Bathymodiolus septemdierum
Brite
KEGG Orthology (KO) [BR:
ebh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ebh03016
]
BSEPE_1297 (rnb)
Enzymes [BR:
ebh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
BSEPE_1297 (rnb)
Transfer RNA biogenesis [BR:
ebh03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
BSEPE_1297 (rnb)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
HTH_RNase_II
Motif
Other DBs
NCBI-ProteinID:
BAS68281
UniProt:
A0A0P0USY9
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Position
complement(1252996..1254807)
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AA seq
603 aa
AA seq
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MKNSLVAYKGKPARITDIVESKFALEFADGATLKVREKDFRFIHPEFTTVNEDYSKADFE
MLAEFQEETLTLQEITEWLFDEYTAQNAWCVCLMVEDGLYFYWQKDRIFVRPTSQIENIQ
AKRDAEKLAAQSLTHCVENLSNNTFNEADEPYLKEIARVALNQSKTAKILAQVGVENTPD
AAYQLLLKIKYFAVDFNPYPARFAIPKDEEIAVKVPEIERVDLTHLTCYAIDNDGSNDAD
DAISIDGNTLWVHVADVANIVPSGSDLDVYAQERGSNFYLPNEIIHMLPVSVTEASALGA
TEKSDALSFSFEFDGENINNIKVMQSVVCVTNTTYEAVDEMLMANSNEDLARIKAIGEAH
KKYRDAQGSINLHLPNVDVRLVDGKVIIAPQATSASRDLVAEMMVMAGRTMAQFTNDNLI
PVPYALQDKGDFDEEFLAKKDALTLSESFLAIKNFKRSAISVKPLLHYGLGLPYYLRVTS
PMRRYYDLLAHQQIINFINDKPMLEVKRVKEIIGSVNMALADVGRVDRFSKDHFKCVFLM
QNPKWLGTGIVVDTRGDKALFMIPELGMMTQIKFKNLPKLDEEMQLQVTRVNLVDKSANF
KVT
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
atgaagaattctctggttgcctacaagggcaaacctgcacgcattaccgatattgttgaa
agcaagttcgccttagaatttgccgatggtgcaacgctaaaagtacgcgagaaagatttt
cgatttattcatccggaatttaccacagtcaatgaagactactcaaaagccgactttgaa
atgttggcagaatttcaagaagaaaccttaaccctgcaagaaattaccgaatggctgttt
gacgaatatacggcgcaaaacgcttggtgtgtgtgcctaatggtggaagatgggctgtat
ttttattggcaaaaagaccgtatttttgtgcggccgacttcgcagattgagaatatacaa
gcaaagcgcgatgctgagaaattggcggcacaaagtttgacacattgtgttgagaatttg
tctaataacacctttaatgaggcagatgagccctaccttaaagagattgctagagtagcg
cttaatcagtcgaaaacggcaaaaattttagcgcaagtcggtgtggaaaatacacccgat
gcagcgtatcaattgttacttaaaattaaatattttgcagtagattttaatccatatcct
gcccgttttgccattcctaaagacgaagaaattgcagtgaaagtgccagaaatagagcgc
gttgatttaacgcatttgacttgttacgccattgataatgacggctcaaatgatgccgat
gatgccattagtattgatggcaatacgctgtgggtacatgtggcagatgtggcaaatatt
gtaccatctgggtcggatttggatgtttatgcacaggagcgaggctctaatttttatttg
ccgaatgaaattattcatatgttgccagtttcagtgacggaggcatcagccttaggggca
acggaaaaatcagacgctttgtcatttagttttgaatttgacggtgagaacattaataat
attaaagttatgcaaagtgtggtttgtgtgactaacaccacttatgaagcggtagatgag
atgttgatggcgaattctaatgaggatttggcacgcatcaaagcgattggcgaggcgcat
aaaaaatatcgagatgcccaagggtctattaacctgcatttgccaaatgttgatgtgcgc
ttggttgatggaaaagtcattattgcacctcaagcgaccagtgccagtcgagatttagtg
gcagaaatgatggtgatggcagggcgtacaatggcacaatttacgaatgataatctaatt
cctgtgccttatgctttgcaggataaaggagattttgacgaagaatttttggcaaaaaaa
gacgcattaactctgagcgaatcttttttagcgattaagaattttaagcgctctgcaatt
tcagttaaaccgttattacattatggtttaggactgccttattatttgcgcgtaaccagt
ccgatgcgtcgctattatgatttattggcacaccagcaaattattaatttcatcaatgat
aaaccaatgttggaagtgaaacgcgtgaaagaaattatcggctcagttaatatggcgttg
gcagatgtcggcagggttgaccgttttagcaaagaccattttaaatgcgtctttttaatg
caaaatccaaagtggttgggtacgggcatcgttgttgatactcgtggcgataaggcgtta
tttatgattcctgaattagggatgatgacgcagattaaatttaaaaatctgccaaaatta
gatgaagaaatgcaacttcaggtgacgcgtgttaatttggttgataaatcagcgaatttc
aaggtaacttaa
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