Endosymbiont of Bathymodiolus septemdierum: BSEPE_1321
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Entry
BSEPE_1321 CDS
T04606
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ebh
Endosymbiont of Bathymodiolus septemdierum
Pathway
ebh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ebh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BSEPE_1321 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ebh03019
]
BSEPE_1321 (rhlE)
Enzymes [BR:
ebh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BSEPE_1321 (rhlE)
Messenger RNA biogenesis [BR:
ebh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BSEPE_1321 (rhlE)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
BAS68304
UniProt:
A0A0P0UT09
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All DBs
Position
complement(1273536..1274816)
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AA seq
426 aa
AA seq
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MGFSKLGLSDAILEAVIKKGYDKPSPIQEQAIPVVLDGKDIMAAAQTGTGKTAGFTLPIL
QLLSKGTPAKSNQVRTLILTPTRELAAQVNASVMDYGRQLPLKSTVVFGGVKINPQMQKL
RGGVDILVATPGRLLDLYSQNAVKFDHLEIFVMDEADRMLDMGFIHDIKRILKILPANRQ
TLMFSATFSDDIRKLAKTLVNDPVEISVTPRNTTVKSVKQWIHPVDKSKKQALLTHLIQE
HSWYQVLVFSRTKHGANRIATQLGKRGITAAAIHGNKSQGARTRALADFKAGKVNVLVAT
DIAARGIDIVELPHVVNFDLPNVPEDYVHRIGRTGRAGSKGEAISLVSADEAKQLFDIER
LTQKKLERIMVDDFIPNHDVPETGKKLLPPKNKKPKKSKSRNKPRYGKNSNSADNKPKKK
KTFFKK
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
atgggtttttcgaaattaggtttatctgacgccatccttgaggcagtcattaaaaagggc
tacgacaaaccgtcgcccattcaagaacaggcaattcctgttgttttagatggtaaggac
attatggccgctgcacaaacaggtaccggtaagaccgcaggctttactttgccaattttg
caacttctatcaaaaggcacccctgcaaaatccaaccaagtgcgcacccttatcttgaca
ccaacacgcgagcttgccgcacaagtgaatgccagcgtgatggattatggtaggcagtta
ccactcaaatcaaccgtggtttttggtggcgttaaaatcaacccacaaatgcaaaaactc
agaggtggtgtggatatcttggtagcaaccccaggtagattattagatttatattcacaa
aatgcagtgaaattcgaccatttagaaatttttgtgatggatgaagccgacagaatgtta
gatatgggatttatccacgatattaagagaattttaaagattttaccagcaaatagacaa
actttaatgttttcagctactttttctgacgatattagaaaactggctaaaaccttggtt
aatgatccagtagaaatttcagtaaccccaagaaataccacagtgaaatccgtcaaacaa
tggattcatcccgttgacaaatctaaaaaacaagccctgctgacgcatcttatacaagaa
cacagttggtatcaagtgttggtatttagtcgcactaagcatggcgctaatcgtattgcc
acacagttgggaaaacgcggcatcaccgccgccgccattcatggcaataaatcccaaggc
gctagaacacgcgccttagcagatttcaaagctggaaaagtgaatgtcttagtggcaacc
gacatcgctgcccgtggcattgacatcgttgaactccctcatgtggttaactttgacctt
cccaatgtcccagaggattatgttcatcgtatcggtagaacaggtcgtgctggttcaaaa
ggagaggccatttcattagtcagcgccgacgaagccaaacaattgtttgacatcgaacgc
ctaacccagaaaaaacttgagcgcataatggttgatgattttattccaaatcacgatgtt
cctgaaactggtaagaagttactacccccaaaaaataagaaaccaaagaaaagcaaaagt
cgcaacaaaccaagatacggaaaaaatagtaactctgccgacaataaacccaagaagaaa
aaaacttttttcaaaaaataa
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