Erwinia billingiae: EbC_16470
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Entry
EbC_16470 CDS
T01270
Symbol
rne
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ebi
Erwinia billingiae
Pathway
ebi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ebi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EbC_16470 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ebi03019
]
EbC_16470 (rne)
03009 Ribosome biogenesis [BR:
ebi03009
]
EbC_16470 (rne)
Enzymes [BR:
ebi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
EbC_16470 (rne)
Messenger RNA biogenesis [BR:
ebi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EbC_16470 (rne)
Ribosome biogenesis [BR:
ebi03009
]
Prokaryotic type
rRNA processing factors
EbC_16470 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
CAX59178
UniProt:
D8MQS1
LinkDB
All DBs
Position
complement(1851546..1855379)
Genome browser
AA seq
1277 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEISREYFPSNYNSHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALSALELPEGMGLIVRTAGVGKSAEAL
QWDLSFRMKHWDAIKKAADSRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA
RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDYIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLS
LSILRLIEEEALKENTKEVHAIVPVQIASYLLNEKREAVSAIEKRQGGVRAIIVPNDQMQ
TPHYSVLRVRTGEETQTLSYHLPKLHEAEMALPSEEEHAERKRPEQPALAAFVMPDAPPA
PQEAVVAEAPPVAAVAAEPAPAAAAKAPAEAGTGLMSRFFRGLKKMFAGEEKPVEQQPQP
AVVVEEKAPEAAAPRGERRNNRRQNNRRDRNNSGERGERYGDRNERNADRNGSERNERTE
RNGNDRNERNDRNGSDRNERNADRNTDRNADRNERTSDRPERNERNDRSERTPRNDRNSN
RNERMTRDRDPAAESREENRRNKRNAPAVESPEDLLMQAVAEDAQQQQPRRERQPRRRQD
EKRAPVQEEKVAEIAEIPETVVDASVDVDGDEHVQVMPRRKPRQLDQKVRIETAEQTAAR
SFAPTEDEVAPVLEQTADFPAAEHASDAEEGEDRDSNSMPRRSRRSPRHLRVSGQRRRRY
RDERYPNQSPMPLTFAAASPEMASGKVWITYPVAQATDEHEHEQSVVPEYGHQDTADAIA
VAATADAAQPEVIAEAQPVHFSEPQPENTPAVTLVNTDETTAIETAVNEEPSVVSAADEV
IADAVTQQAVPAEEAPAVQAVDAVEEIVVEAKQAEEQRVAEEASHQAEEAASDVSPALEQ
QVEEVLAAPEAVADVTATEPHAPVPARDEPVEAPVALTPVAAPVEAPVAQAPVATPVEAP
VAQAPVAAPVEAPAAQAPVAAPVEAPVAQTPVAAPVEAPVAQAPVAAPVEAPAAQAPVAA
PVEAPAAQAPAAAAVTAQPAYKHHATAPMTKAPAPEYQAEPARASDWVRPDYQFDGQGSA
GGHAATHQATAPATRPE
NT seq
3834 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttgataaacgcaactcagcaggaggagttgcgtgtcgccctggtggat
ggacagcgcctgtacgacctggatattgaaagcccaggacacgaacagaaaaaagccaac
atctataaaggcaagatcacccgcattgaaccaagtcttgaagcagcatttgtcgattac
ggtgctgaaagacacggttttctccctctgaaagaaatctcccgcgaatacttcccaagt
aattacaattcccatggtcgccctaatatcaaggacgtactgcgtgaaggtcaggaagtt
attgttcagatcgataaagaagaacgtggaaataaaggcgccgccttaaccacctttatc
agtctggccggcagctatctggtgctgatgccgaataacccacgtgctggcggtatttcc
cgtcgcatcgaaggtgatgaccgtactgaactgaaagaggcgctctctgcacttgagctg
ccagaagggatgggtctgatcgttcgtaccgcaggcgttggcaaatctgccgaagcgctg
cagtgggacttaagcttccggatgaagcactgggacgcgattaaaaaagccgctgacagc
cgccctgctccgttcctgatccatcaggaaagcaacgttattgtccgcgccttccgcgat
tatctgcgtcaggatatcggtgaaatccttatcgataacccgaaagttctggagcttgct
cgtcagcatatcgctgccctgggccgcccggacttcagcagcaaaattaagctctacacc
ggtgaaattccgttgttcagccactatcaaatcgaatcgcaaatcgaatctgccttccag
cgtgaagtgcgcctgccttctggcggctcgattgtcatcgacaccactgaagcgctgacc
gccattgatatcaactccgctcgcgcaacgcgcggtggcgatatcgaagaaacggccttc
aacaccaacctggaagcggcagacgaaattgcccgtcagctgcgcctgcgtgaccttggc
ggcctgatcgttatcgattacatcgatatgaccccggttcgtcaccagcgtgcggttgaa
aaccgtctgcgtgaagccgttcgtcaggaccgcgcccgcattcagatcagccacatttcg
cgtttcggcctgctggagatgtcccgtcagcgcctcagcccatcactgggtgagtcaagc
catcacgtctgcccacgctgtagcggcaccggcaccatccgtgataacgaatcgctgtca
ctctctattctgcgtctgattgaagaagaagcgctgaaagagaacaccaaagaagttcac
gcaatcgttccagtgcagattgcctcttacctgctgaacgaaaaacgcgaagcggtaagc
gcgattgaaaaacgccagggcggcgtgcgggccatcatcgtgccaaacgatcagatgcaa
accccacactactccgttctgcgtgtgcgcaccggtgaagagacacaaaccctcagctac
cacttgccgaagctgcatgaagccgaaatggcgctgccttctgaagaagagcacgccgag
cgcaaacgtcctgagcaaccggctctggccgcgtttgtgatgcctgatgcgccaccagca
ccacaggaagcggttgttgctgaagcgccaccggtggcagcagtagcagcagagccagcc
cctgcggcggcggctaaagcccctgccgaagcgggaaccggcctgatgagtcgcttcttc
cgcggcctgaagaaaatgtttgccggtgaagagaagccagtagaacaacagcctcagcca
gccgttgtggtggaagagaaagctcctgaagcggcagcgccacggggtgaacgtcgtaat
aaccgccgtcagaataaccgtcgtgaccgcaataacagcggcgaacgcggtgagcgctat
ggcgaccgtaacgaacgcaatgccgatcgtaatggttctgagcgtaacgaacgcaccgag
cgtaatggcaatgaccgcaacgagcgtaatgaccgtaacggttctgaccgtaacgagcgt
aacgccgatcgcaatactgaccgcaatgcggatcgcaacgagcggacttctgaccgtccg
gaacgtaatgagcgtaacgatcgcagcgagcgcaccccgcgtaacgaccgtaactctaac
cgcaatgagcgcatgactcgcgaccgcgatcctgctgctgaaagccgtgaagagaaccgt
cgtaacaagcgtaatgcgccggccgttgagtctccggaagatctgctgatgcaggctgtc
gccgaagatgcacaacagcaacagccgcgtcgtgagcgtcagccacgtcgtcgtcaggac
gaaaaacgcgcgccagtgcaggaagagaaagtcgctgaaatcgctgagattcctgaaacc
gttgttgatgcttccgttgatgttgacggtgatgagcacgttcaggttatgccgcgccgt
aagccgcgtcagttggatcagaaagtgcgtatcgaaacggctgagcaaactgcggctcgc
tcttttgcgccgacagaagacgaggttgcaccggtactggagcagactgctgacttccct
gcggcagaacacgccagtgacgcggaagaaggcgaagatcgtgacagcaacagcatgcca
cgtcgttcacgtcgctctcctcgtcatctgcgcgtcagcggtcaacgtcgccgtcgctac
cgtgatgagcgctacccgaaccagtcgccaatgccactgaccttcgcggctgcgtcgcca
gaaatggcttccggtaaagtgtggatcacctatcctgttgctcaggcaacggatgagcat
gaacacgagcagtctgtggtgccagagtacggtcatcaggatacggctgatgcgattgcc
gtggctgcaacagcagacgctgcacagcctgaagtgattgctgaagctcagccggtgcat
ttctctgagccacagccggaaaataccccggcagtgacgctggtgaacactgacgaaacg
actgctatcgaaacagccgttaatgaagagccgtctgtggtgtctgccgctgacgaagtt
atcgctgatgctgtgactcaacaggctgtgccagctgaagaggctccggcagttcaggct
gtcgacgcggtagaagagattgtggttgaagcgaagcaggctgaagagcagcgtgtggca
gaagaagccagccatcaggctgaagaagccgcctctgacgtcagcccggcgctggaacag
caggtagaagaagtgttggcagcaccggaagccgtggccgatgtcactgcaaccgagccg
catgcacctgttcctgcccgtgacgagccggttgaagccccagttgctctgactcctgtt
gctgcaccggttgaagcaccggttgctcaggctcctgttgctacgccggttgaagcaccg
gttgctcaggctcctgttgctgcaccagtagaagcaccagcggctcaggcacctgttgct
gcgccggttgaagccccagttgctcagacccctgtggctgcaccagtagaagcaccagtt
gctcaggcacctgttgctgcgccggttgaagcaccagcggctcaggctcctgttgctgcg
ccagttgaagcaccagcggctcaggcacctgctgctgcagcggttaccgctcagcccgct
tacaagcaccacgcaacggcgccaatgactaaagcgcctgcacctgagtatcaggctgaa
cctgcgcgtgcaagtgactgggtacgccctgactatcagttcgatggtcagggttctgca
ggcgggcatgctgcaacccatcaggcaacggctccggcaactcgcccagagtaa
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integrated database retrieval system
