Erwinia billingiae: EbC_38800
Help
Entry
EbC_38800 CDS
T01270
Symbol
rpoD
Name
(GenBank) Sigma D (Sigma 70) factor of RNA polymerase
KO
K03086
RNA polymerase primary sigma factor
Organism
ebi
Erwinia billingiae
Pathway
ebi02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ebi00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
EbC_38800 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ebi03021
]
EbC_38800 (rpoD)
Transcription machinery [BR:
ebi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
EbC_38800 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
HAP1_N
DNA_ligase_A_N
Motif
Other DBs
NCBI-ProteinID:
CAX61411
UniProt:
D8MX54
LinkDB
All DBs
Position
4319824..4321662
Genome browser
AA seq
612 aa
AA seq
DB search
MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVVEEAP
DADDLILNENSSDTDEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEID
IAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAGEARLSDMITGFVDPNAEAEIAPTA
THVGSELSEAERNDNDEEEEDEDDAEDDNSIDPELAREKFNDLRVQYEKARTVIKAKGRS
HADAAAEIQNLSDVFKQFRLVPKQFDFLVNSMRIMMDRVRTQERLIMKFCVEICKMPKKN
FITLFTGNETSETWFKAALAMNKPWSEKLKDVADDVQRGLMKLGQIEQETGLTIEQVKDI
NRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEY
RRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPE
ELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATSESLR
SATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHP
SRSEVLRSFLDD
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaacccgcagtcacagcttaagcttcttgtcacccgtggtaaagagcaaggc
tatctgacctatgccgaggtcaatgaccatctgccggaagatatcgtcgactccgatcag
atcgaagacatcattcagatgatcaacgacatgggcatccaggttgtagaagaagcgcct
gatgccgacgatctgatcctcaacgaaaacagcagcgacactgacgaagatgccgccgaa
gccgccgctcaggtgctgtccagcgttgaatctgaaatcgggcgtaccactgacccggtg
cgtatgtacatgcgcgaaatgggtaccgttgaacttctgacccgcgaaggcgaaatcgac
atcgctaagcgtatcgaagacggtatcaaccaggttcagtgctccgttgccgaatatccg
gaagctattacctatttgctggaacagtatgaccgtgttgaagcgggcgaagcacgcctg
tcagacatgatcaccggctttgtcgatcccaacgctgaagcagaaattgcccctaccgcc
acccacgtgggctctgagctttctgaagcagaacgtaacgacaacgacgaagaagaagaa
gacgaagacgacgcggaagatgacaacagcatcgacccggaactggcgcgcgagaagttt
aacgacctgcgtgttcagtacgagaaagcgcgtaccgtgatcaaagctaaaggccgcagc
cacgctgatgccgccgctgagatccagaatctttctgacgtcttcaagcagttccgcctg
gtgccgaagcagttcgacttcctggtcaacagcatgcgcatcatgatggatcgcgttcgt
acgcaagagcgcctgatcatgaagttctgtgttgaaatctgcaaaatgccgaagaagaac
ttcatcaccctgttcaccggcaacgaaaccagcgaaacctggttcaaagccgcgctggca
atgaacaagccatggtctgagaagctgaaagacgtcgccgatgacgtgcagcgcggcctg
atgaagctcggacagattgagcaagaaaccggcctgaccatcgagcaggttaaggacatc
aaccgtcgtatgtctatcggtgaagctaaagcccgccgtgcgaagaaagagatggttgaa
gcgaacttacgtctggttatctcgattgccaagaagtacaccaaccgtggtctgcagttc
ctggatctgattcaggaaggtaacatcggtctgatgaaagccgttgataagtttgaatat
cgccgcggttataagttctcaacttatgccacctggtggatccgtcaggctatcacccgc
tccatcgctgaccaggcgcgcaccatccgtattccggtgcatatgattgagaccatcaac
aaactcaaccgtatttcccgccagatgctgcaggaaatgggtcgcgagccgacgccggaa
gaactggccgaacgcatgctgatgccagaagataaaatccgtaaggtgctgaaaatcgct
aaagagcctatctctatggagacgccgattggtgatgacgaagattcgcatctgggtgat
ttcatcgaagataccacgctggagctgccgctggattccgcgacctccgagagcctgcgc
tctgccacgcacgatgtgctggctggcctgaccgcgcgtgaagcgaaagtattgcgtatg
cgtttcggtatcgatatgaataccgaccacacgctggaagaagttggcaagcagtttgac
gtaacccgtgagcgtattcgtcagattgaagcgaaggcgctgcgtaaactgcgtcatccg
agccgctctgaagtgctgcgcagcttcctggacgattaa
DBGET
integrated database retrieval system
