Erwinia billingiae: EbC_39960
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Entry
EbC_39960 CDS
T01270
Symbol
deaD
Name
(GenBank) Cold-shock DEAD-box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ebi
Erwinia billingiae
Pathway
ebi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ebi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EbC_39960 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ebi03019
]
EbC_39960 (deaD)
03009 Ribosome biogenesis [BR:
ebi03009
]
EbC_39960 (deaD)
Enzymes [BR:
ebi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EbC_39960 (deaD)
Messenger RNA biogenesis [BR:
ebi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EbC_39960 (deaD)
Ribosome biogenesis [BR:
ebi03009
]
Prokaryotic type
rRNA helicases
EbC_39960 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
CAX61527
UniProt:
D8MXH0
LinkDB
All DBs
Position
complement(4461381..4463318)
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AA seq
645 aa
AA seq
DB search
MTDIETTFADLGLNAELLESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAF
SLPLLNNIDSSLKAPQILVLAPTRELAVQVGEAITDFSKHMKGLNVVALYGGQRYDVQLR
ALRQGPQVVVGTPGRLLDHLKRGTLDLSNLRGLVLDEADEMLRMGFIEDVETIMAQIPDN
HQTALFSATMPEAIRRITKRFMKDPQEVRIQSSMTTRPDISQSYWTAFGRKTDALTRFLE
AEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIA
TDVAARGLDVERISLVVNFDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE
RTMKLTIPEVELPNAELLGERRLAKFAAKVQQQLESSDLEQYRALLSKMQPAEDELDIET
LAAALLKMAQGERPLIVPADAPQRPRREFKERDDRRGDRPERGPREKSEGGERPARRERR
DVGDMEVYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGTHSTIELPKGMPGDI
LQHFTRTRILNKPMNMQLIGDAVPHSKERTGGGERRGPAPARGGFGAGNREGGRSDRPEG
GRRFSNDRNGPAAGGERRGGGFSRDGGNRGPRTEGGNAPTRRRDA
NT seq
1938 nt
NT seq
+upstream
nt +downstream
nt
atgactgatattgaaaccacttttgctgaccttggcctgaacgccgaactccttgaatct
ctgaacggtatgggctacgtgaagccttctccaatccaggctgagtgtattcctcacctg
ttggcaggccgtgatgttctgggtatggcacagaccggtagcggaaaaactgcagcgttc
tcgctgccactgctaaacaacattgatagctccctgaaagcacctcagatcctggtgctg
gcaccaacgcgtgagttggcggttcaggtgggtgaagcgattaccgacttctccaaacac
atgaaaggtctgaacgtggttgccctttacggcggccagcgttatgacgttcagctgcgc
gctttgcgccagggtccacaagttgttgtgggtacgcctggtcgcctgctggatcacctg
aagcgtggcacgttagatctgtctaacctgcgcggcctggtgttggacgaagccgatgaa
atgctgcgtatgggcttcatcgaagacgttgaaactatcatggctcagatcccagacaat
catcagactgctctgttctctgcaaccatgccagaagcgattcgtcgtattactaaacgc
tttatgaaagatccgcaggaagtgcgtatccagtcaagcatgaccactcgccctgatatt
tctcagagctactggacggcttttggtcgtaagactgatgcactgactcgcttccttgaa
gctgaagattttgatgctgctatcatcttcgtgcgtaccaaaaacgcgacgctggaagtt
gctgaagcgctggagcgtagcggttacaacagtgctgccctgaacggtgacatgaaccag
gccctgcgtgagcagactctggaacgcctgaaagatggtcgtctggacatcctgattgcg
accgacgttgcggcccgtggcctggacgttgagcgtatcagcctggtggtaaacttcgac
atccctatggatgcagaatcttacgttcaccgtatcggccgtaccggtcgtgcgggtcgt
gctggccgtgcgctgttgttcgttgagaaccgtgagcgtcgtctgctgcgtaacattgaa
cgcaccatgaagctgaccattccagaagttgaactgcctaacgcagaactgctgggtgag
cgtcgtctggctaagttcgccgctaaagttcagcagcagctggaaagcagcgatctggaa
cagtaccgcgcactgctgagcaaaatgcagcctgcagaagatgagctggatatcgaaacg
ctggccgctgctctgctgaaaatggctcagggtgaacgtcctctgatcgttcctgccgat
gcacctcagcgtcctcgtcgtgagttcaaagagcgtgacgatcgtcgtggtgaccgtcca
gagcgtggtcctcgtgaaaaaagtgaaggtggcgagcgtccagcccgtcgcgaacgtcgt
gacgttggcgatatggaagtttaccgcattgaagttggccgcgatgacggcgttgaagtt
cgtcacatcgttggtgctatcgctaacgaaggcgacatcagcagccgttacatcggtaac
atcaaactgtttggtactcactcaactatcgagctgccgaaaggcatgccgggtgacatc
ctgcagcacttcactcgtacgcgtattctgaacaaaccaatgaatatgcagctgattggc
gatgcagtgccacacagcaaagagcgtactggtggcggtgagcgtcgtggtccagctcca
gcccgtggcggcttcggcgctggcaaccgtgaaggcggtcgtagcgatcgtcctgaaggt
ggtcgtcgcttcagcaatgaccgtaacggtccagctgctggtggagagcgtcgtggcggc
ggtttcagccgtgacggtggcaaccgcggtcctcgtaccgaaggtggcaacgcacccact
cgtcgtcgtgatgcataa
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