Erythrobacteraceae bacterium WH01K: PF049_09650
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Entry
PF049_09650 CDS
T10954
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ebk Erythrobacteraceae bacterium WH01K
Pathway
ebk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ebk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PF049_09650
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ebk03019
]
PF049_09650
03009 Ribosome biogenesis [BR:
ebk03009
]
PF049_09650
Enzymes [BR:
ebk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
PF049_09650
Messenger RNA biogenesis [BR:
ebk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PF049_09650
Ribosome biogenesis [BR:
ebk03009
]
Prokaryotic type
rRNA processing factors
PF049_09650
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
WBY15860
LinkDB
All DBs
Position
1963007..1965748
Genome browser
AA seq
913 aa
AA seq
DB search
MATRMLIDARHTEETRVAVLKGNRIEEFDFESADHKQIKGNIYLAKVTRVEPSLQAAFVD
FGGNRHGFLAFSEIHPDYYQIPQSDREALLAEEAEAAEEEARLRAEEEDRGEMPGDEYDA
EDEESGEALAEDLAEDGVEEIDTSDKEKVATIEEGHVDGDDDDSDDEDDDDEGSEESGKR
GRRGRGRRQGKGKGKGRSRAKEVDDVRARRQALRRRYKIQDVIQRRQVLLVQVVKEERGN
KGAALTTYLSLAGRYTVLMPNSSHGGGISRKINSASDRKRLKQIVGDLNLPKTMGLIVRT
AGISRTKTEIKRDFDYLARLWDGIRETTLSSSAPSLIHSDSDLIKRAIRDIYNREIEEVV
VEGEDGYKAAKQYMKLLMPSHARRVKAYSDPVPLFQRYGAEDQLRAMYDPVVQLKSGGYL
VINPTEALVSIDINSGRSTKEHGIEQTALATNLEAAKEIARQLRLRDMAGLVVIDFIDME
RMGNIRKVERCMKDALKNDRARIQVGRISGFGLMEMSRQRLRTGVLEASTRECPHCDGTG
LVRTASSAGLSALRLIEDEAAKGKGTTITLSASTEAAVYLLNSKRSELQEIEDRYNVSVE
VVPEGEDEGAKMTIGSSGPKPTEAPKFEPIVDEDDDEDDDIAADGDEEGDDRDDDRPRKK
RRRRGGRGRNKNRNQDGDNSTDDSSDENADDTSSEASGGGDGDDENGDRPRKRRRRGGRR
RGGRGRGGNNGGENESENSEANEGDAANGAEQLEEVSEQVKDDMAVVAGPDDAPEAAEAM
AEDDQPAEKPKRKRAPRKKADTAPDSASAEVEATDKEEKPKRKRAPRKKADADEKPAGGQ
DASEATGEKPKRKRAPRKKAVAAAEEVAEQVKEDAAVVSGPDDAPQAAEAMAEEEEKPAK
PKRGGWWQRTFGE
NT seq
2742 nt
NT seq
+upstream
nt +downstream
nt
atggcaacgcgcatgcttatcgatgcgcgccacacggaagaaacccgggtggcggtcctc
aagggaaaccggattgaggaattcgactttgaatctgccgatcacaagcagatcaaggga
aatatctatctggccaaggtcacgcgggtcgaaccctcgctgcaggccgcgttcgtagat
ttcggcggcaatcgccacggcttcctcgccttcagcgaaatccatcccgattattaccag
atcccgcagtccgaccgcgaggcactgcttgctgaagaagcagaagcggcagaggaagaa
gcccgtcttcgcgcagaggaagaagaccgcggtgaaatgcccggtgacgaatatgatgcg
gaagacgaggaaagcggcgaagccctcgccgaagacctcgccgaagacggtgtcgaggaa
atcgatacctccgacaaggaaaaggtcgccacgatcgaggaaggtcacgtcgatggagac
gatgacgattccgacgacgaggacgacgatgacgaaggttcggaggaatccggcaagcgc
ggtcgccgtggtcgtggacgccgccagggcaagggtaagggcaagggccgcagccgtgcc
aaggaagtcgacgacgtgcgcgcacgtcgccaggcgcttcgccgccgttacaagatccag
gacgtcatccagcgccgccaggtcctgctcgtacaggtcgtgaaggaagagcgcggcaac
aagggcgccgccctcaccacctatctcagccttgcgggccgctataccgtcctcatgccg
aacagcagccatggcggcggcatttcgcgcaagatcaattcggccagcgaccgcaagcgg
ctgaagcagatcgtgggcgacctcaacctgcccaagaccatgggcctgatcgttcgcacg
gcaggcatctcgcgcaccaagaccgagatcaagcgtgacttcgactatctcgcccggctg
tgggacgggattcgcgaaacgacgctgtcgagcagtgcgcccagcctcattcattccgac
agcgacctgatcaagcgcgccatccgcgacatttacaaccgcgagatcgaggaagtcgtc
gtcgagggcgaggatggctacaaggcggcgaagcagtacatgaaactgctgatgcccagc
cacgcacgccgggtgaaggcctattccgatcctgttccgctgttccagcgctatggcgcc
gaagaccagcttcgcgccatgtacgacccggtggtccagctcaaatcgggtggctacctc
gtcatcaacccgaccgaggcgctcgtctcgatcgacatcaactccggtcgctccaccaag
gagcatggcatcgagcagaccgcgctcgcgacgaacctggaagcggcaaaggaaatcgcc
cgccagctgcgcctgcgcgacatggcgggcctggtcgtcatcgacttcatcgacatggaa
cggatgggcaatatccggaaggtcgaacggtgcatgaaggatgcgctgaagaacgaccgc
gcgcggatccaggtcggccggatttccggcttcggcctgatggaaatgagccgccagcgc
ctgcgcacgggcgtgctggaggcatcgacccgcgaatgtccgcattgcgacggcacgggg
ctggtccgcaccgcgtccagcgccggtctttcggccctgcgcctgatcgaggacgaggct
gcgaagggcaagggaaccacgattaccctgtccgccagcaccgaggctgccgtgtacctg
ctgaacagcaagcgttcggaactccaggaaatcgaagatcgctacaatgtcagcgtcgaa
gtcgtgcccgaaggcgaggacgaaggcgccaagatgaccattggcagttcgggtcccaaa
cctaccgaagccccgaagttcgagcctatcgtcgatgaagacgacgacgaggatgacgat
atcgcggcagatggcgacgaggaaggcgacgaccgtgatgacgatcgtccgcgcaagaaa
cgccgccgccggggtggccgtggtcgcaacaagaaccgcaatcaggacggcgacaattcc
accgacgatagctcggacgagaacgccgacgacacttcgtccgaagcatcgggtggtggc
gacggcgacgacgaaaacggggaccgccccaggaagcgtcgtcggcgcggtggccgcagg
cgtggtggacgtggtcgcggcggcaataatggcggcgagaacgaatccgagaactccgaa
gcgaacgaaggcgatgccgcaaacggcgccgaacagctggaggaagtgtcggagcaggtg
aaggacgacatggcggttgtcgccggtccggacgatgcgccggaagctgcggaagccatg
gctgaagacgatcagccggcggagaagcccaagcgcaagcgcgccccgcgcaagaaagcg
gacaccgcgccggacagcgcctctgccgaggtcgaagcgaccgacaaggaagagaagccg
aagcgcaagcgtgctccgcgcaagaaggcggacgccgacgagaaacctgccggtggccaa
gacgcctccgaagcaaccggggagaagccgaagcgcaaacgcgcccctcgcaagaaagcc
gtggctgctgccgaggaagttgccgaacaggtgaaggaagacgccgcagtggtttccggc
cccgacgacgctccgcaagcggctgaggcgatggccgaggaagaggaaaagcctgccaag
cccaagcgcggcggctggtggcagcgcactttcggcgaataa
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