Erythrobacteraceae bacterium WH01K: PF049_12285
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Entry
PF049_12285 CDS
T10954
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ebk Erythrobacteraceae bacterium WH01K
Pathway
ebk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ebk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PF049_12285
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ebk03019
]
PF049_12285
03009 Ribosome biogenesis [BR:
ebk03009
]
PF049_12285
Enzymes [BR:
ebk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PF049_12285
Messenger RNA biogenesis [BR:
ebk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PF049_12285
Ribosome biogenesis [BR:
ebk03009
]
Prokaryotic type
rRNA helicases
PF049_12285
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
WBY16353
LinkDB
All DBs
Position
complement(2487861..2489690)
Genome browser
AA seq
609 aa
AA seq
DB search
MSFSDLPPILAEALSGQGYEAPTAVQAAVTAPDARGRDLVVSAQTGSGKTVAFGLAIADE
MLGEEGALPFAASPLALIIAPTRELALQVSRELGWLYGAAHARIATCVGGMDASKERRAL
KHGAHIVVGTPGRLRDHLERGALDLSSLRAAVLDEADEMLDMGFREDLEEILDATPEGRR
TLLFSATMPKPIEALARRYQNDALRISTVGDERGHGDIAYQAVTVAPAEIEAAVVNLLRF
HEAETAILFCATRDKVRRFHAMLQNRGFAVVALSGEHSQSERNHAMQALRDKRARVCVAT
DVAARGIDLPSLSLVVHVEIPRDAETLQHRSGRTGRAGKKGTAVLVVPYPRRRRVQSMLR
GARIEADWIDAPTPKDIRYADRERLMEMLLEPAEYDKEDRKLAQRLMAERSAEDIAAALV
AAHRSKMPRPEELIANTPEARKADKQDRRRDGFDDTVWYRIDIGRRHNADPRWVLPLLCR
RGHITRNEVGAIRIGANETHFQIPRAVAAKFDDAVARTAQGDDEQDRLVIEPSEGPREAA
RGHRRGRDDGDFGAARGPKPPFRKGGGPGKPGGKPGSRPGGKFAGKSAAKGGKKPHRKGG
GFKNGPRPS
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atgtccttttccgaccttcccccgatccttgccgaggcgctgtccggccagggctacgaa
gcaccgaccgcggtgcaggcggccgtcaccgcgcccgatgcgaggggccgcgacctcgtg
gtgtccgcgcagaccggatcgggcaagaccgtggccttcggtcttgccatcgcggacgag
atgctgggcgaggaaggcgcgcttcccttcgcagccagtcctctggcactcatcatcgca
ccgacgcgcgaactggcgctgcaggtcagccgcgaactgggctggctgtacggcgcagcc
catgcccgcattgccacctgcgtgggcggcatggacgcatcgaaggaacgccgcgcgctg
aaacacggcgcgcatatcgtcgtaggcacaccgggtcgcctgcgcgatcacctcgagcga
ggtgcgctggacctgtcgtcgctgcgcgcagccgttctcgacgaggcggacgagatgctg
gacatgggcttccgcgaggatctggaagaaatcctcgacgcgacgccggagggtcggcgc
acgctgctgttctcggccaccatgcccaagcccatcgaggccctggcccgccggtaccag
aacgacgcgctgcgtatctccaccgtcggggacgagcggggacatggcgacatcgcctac
caggcggtgaccgtcgcgccggcggaaatcgaggcggcggtggtcaacctgcttcgcttc
cacgaggcggaaaccgcgatcctgttctgcgccacgcgggacaaggtccgccgcttccac
gccatgctgcagaaccgcggctttgccgtcgtcgccctgtcgggcgagcattcgcagagc
gagcgcaaccacgcgatgcaggcgctgcgggacaagcgggcacgggtctgcgtcgccacg
gacgtggcggcacgcgggatcgacctgcccagcctcagccttgtcgtccatgtcgaaatc
ccgcgcgatgcggagacattgcagcatcgttcgggccggaccggacgtgcaggcaagaag
gggaccgccgtgctggtcgttccctatccgcgccggcgccgcgtgcagtccatgctgcgc
ggtgcgcggatcgaggcggactggatcgacgccccgacgccgaaggacatccgttacgcc
gaccgcgagcggttgatggaaatgctgctggaaccggcggaatacgacaaggaagaccgc
aagctggcgcagcgactgatggccgaacgttcggccgaggatattgccgcggcgctggtc
gctgcgcaccggtcgaaaatgccccggcccgaagagctgatcgccaacacgcccgaggct
cgcaaggcagacaagcaggatcgacggcgcgacgggttcgacgacaccgtctggtaccgg
atcgatatcgggcggcgccacaatgccgacccgcgctgggtcctgccgctgctgtgccgc
cgcggacacatcacgcgcaacgaagtcggcgccatccgcatcggagcgaacgaaacgcat
ttccagatcccgcgcgccgttgctgcgaaattcgacgatgccgtggcgcgtaccgcgcag
ggcgacgatgaacaggaccgtctggtcatcgaaccatccgaaggcccgcgcgaagcggct
cgcggccatcgccggggccgcgacgacggggatttcggcgcggcacgtggacccaaaccg
ccattccgcaagggtggcggccccggaaaacccggtggcaaacccggcagcaggcccggc
gggaaattcgccggaaagtctgctgccaagggcggcaagaaaccgcaccgcaagggtggc
ggcttcaagaatggcccacggcccagctaa
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