Escherichia coli BL21(DE3): ECD_01368
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Entry
ECD_01368 CDS
T00931
Symbol
hrpA
Name
(GenBank) putative ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
ebl
Escherichia coli BL21(DE3)
Brite
KEGG Orthology (KO) [BR:
ebl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ebl03019
]
ECD_01368 (hrpA)
Enzymes [BR:
ebl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
ECD_01368 (hrpA)
Messenger RNA biogenesis [BR:
ebl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
ECD_01368 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_19
AAA_22
nSTAND3
T2SSE
NACHT
ResIII
PhoH
AAA_23
AAA_16
NTPase_1
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
ACT43252
UniProt:
A0A140N9E7
LinkDB
All DBs
Position
1436345..1440247
Genome browser
AA seq
1300 aa
AA seq
DB search
MTEQQKLTFTALQQRLDSLMLRDRLRFSRRLHGVKKVKNPDAQQAIFQEMAKEIDQAAGK
VLLREAARPEITYPDNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRG
IKGLIGHTQPRRLAARTVANRIAEELKTEPGGCIGYKVRFSNHVSDNTMVKLMTDGILLA
EIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSRH
FNNAPIIEVSGRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELSQESPGDILIFMSGE
REIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQSHSGRRIVLATNVAETSLTVPGI
KYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICIRLYSEDDFLSR
PEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAITTDEQ
ASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQDPRERPMDKQQA
SDEKHRRFHDKESDFLAFVNLWNYLGEQQKALSSNAFRRLCRTDYLNYLRVREWQDIYTQ
LRQVVKELGIPVNSEPAEYREIHIALLTGLLSHIGMKDADKQEYTGARNARFSIFPGSGL
FKKPPKWVMVAELVETSRLWGRIAARIDPEWVEPVAQHLIKRTYSEPHWERAQGAVMATE
KVTVYGLPIVAARKVNYSQIDPALCRELFIRHALVEGDWQTRHAFFRENLKLRAEVEELE
HKSRRRDILVDDETLFEFYDQRISHDVISARHFDSWWKKVSRETPDLLNFEKSMLIKEGA
EKISKLDYPNFWHQGNLKLRLSYQFEPGADADGVTVHIPLPLLNQVEESGFEWQIPGLRR
ELVIALIKSLPKPVRRNFVPAPNYAEAFLGRVTPLELPLLDSLERELRRMTGVTVDREDW
HWDQVPDHLKITFRVVDDKNKKLKEGRSLQDLKDALKGKVQETLSAVADDGIEQSGLHIW
SFGQLPESYEQKRGNYKVKAWPALVDERDSVAIKLFDNPLEQKQAMWNGLRRLLLLNIPS
PIKYLHEKLPNKAKLGLYFNPYGKVLELIDDCISCGVDKLIDANGGPVWTEEGFAALHEK
VRAELNDTVVDIAKQVEQILTAVFNINKRLKGRVDMTMALGLSDIKAQMGGLVYRGFVTG
NGFKRLGDTLRYLQAIEKRLEKLAVDPHRDRAQMLKVENVQQAWQQWINKLPPARREDED
VKEIRWMIEELRVSYFAQQLGTPYPISDKRILQAMEQISG
NT seq
3903 nt
NT seq
+upstream
nt +downstream
nt
atgacagaacaacaaaaattgacctttacggccttgcagcagcggctggattcgctgatg
ctgcgcgacagactgcgtttttctcgccgtctgcacggtgttaagaaggttaaaaatcct
gatgcacaacaggccattttccaggagatggcgaaagagattgaccaggcggcagggaaa
gtcctgctgcgtgaagcggcacgaccggaaattacttatcctgacaatttaccggttagt
cagaaaaaacaggacattctcgaagcgattcgtgatcaccaggtggtgatcgtcgccggg
gaaacgggttctggtaaaacgactcagttaccgaaaatctgtatggagctggggcgcggg
attaaagggctgatcggccatacccagccgcgtcgcctggcggcaagaacggtggcgaac
cgtattgcggaagagctgaaaacggagccgggcggttgcatcggttacaaagtgcgtttc
agcaatcacgtaagtgataacacgatggtcaagctgatgaccgacggtatcctgctggcg
gagatccagcaagaccgcctgctgatgcagtacgacaccatcattattgacgaagcgcac
gaacgcagcctgaatatcgattttctgctcggctatttgaaagagttgctgccgcggcgt
cctgacctaaaaatcattatcacttccgcgactatcgacccggaacgcttttcgcgccac
tttaataatgcgccgattatcgaagtctccggtcggacctatccggtggaagtgcgctat
cgaccgattgttgaagaagccgatgacaccgagcgcgatcagttgcaggcgatttttgac
gccgtagacgaactgagccaggaaagccctggcgacattctgatctttatgagtggtgag
cgggaaattcgcgataccgccgatgcgctgaacaagctgaacttacgccataccgaaatc
ttgccgctttatgcgcggctttcgaacagcgaacagaaccgcgtgttccagtcgcacagc
ggacggcgcattgtgctggcgaccaacgtcgcggaaacctcgctgaccgtaccggggatt
aaatacgtcatcgaccccggtacagcgcgtatcagccgctacagctatcgcaccaaagtg
cagcgtttgccgattgaacccatttcgcaggcgtctgccaatcagcgtaaaggccgctgt
ggtcgtgtgtccgaagggatctgtattcgtctctattccgaagacgatttcctctcgcgc
ccggagtttaccgatccggagattctgcgtaccaacctggcctcggttattttgcagatg
accgcgctggggctgggcgatatcgctgcgttcccgtttgtcgaagcaccggataaacgc
aatatccaggatggcgtgcgtctgctcgaagaactgggcgcgatcaccacggatgaacag
gccagcgcctataaactgacgccgctcggtcgccagctctcgcagttgcctgtcgaccca
cgtctggcgcgtatggtgctggaagcgcaaaaacatggctgcgtgcgtgaggcgatgatt
atcacgtccgcgctctccattcaggatccgcgcgaacgtccgatggacaaacagcaggca
tcggacgaaaaacatcgtcgcttccacgacaaagaatccgacttcctcgcgtttgtaaat
ctgtggaattatcttggcgagcagcaaaaggcgctttcttccaacgccttccgtcgcctg
tgtcgtaccgattacctcaactatctgcgcgtgcgcgaatggcaggatatctacacccag
ttgcgtcaggtggtgaaagaacttggcattccggttaacagcgaaccggcggagtatcgc
gaaattcacattgcgttgctgacgggtttactttcccatatcggcatgaaagatgccgat
aaacaagaatataccggcgcacgtaacgcgcgtttctccatcttccccggttctggttta
ttcaaaaaaccgccgaaatgggtaatggtggcggaactggtagaaaccagccgcctgtgg
gggcgcattgctgcgcgtatcgacccggaatgggtggagcctgtcgctcagcatttgatt
aaacgtacctacagcgaaccgcactgggaacgggcgcagggcgcggtgatggcaacggaa
aaagtcactgtttatggtttgccgattgttgccgcgcgcaaggtcaactacagccagatc
gatccggcgttatgtcgtgaactctttattcgccatgcgctggtggaaggtgactggcag
acgcgtcacgcattcttccgtgaaaacctgaaactgcgggccgaagtggaagagctggaa
cacaaatcacgtcgccgcgatattctggttgatgacgaaacgttgtttgagttctacgac
cagcgcatcagccacgatgtaatctccgctcgtcacttcgatagctggtggaaaaaagtc
agccgcgaaacgcctgatttgctcaactttgaaaagagcatgttgatcaaagaaggggcg
gaaaaaatcagcaagctggattacccgaacttctggcatcagggcaatctcaagctgcgt
ttgagctatcagtttgagccaggcgcagacgcggacggtgtgaccgtacatattccgctg
ccgttacttaaccaggttgaggaaagcgggtttgaatggcagatccccggtctgcgccgc
gaattggtgattgctctgattaaatcgttgccgaaaccggtacgccgtaattttgtgcct
gcaccaaactacgccgaagcgtttttaggccgcgtcacaccgctggagttaccgttgctc
gacagccttgagcgcgagttacggcggatgaccggcgttaccgttgaccgcgaagactgg
cactgggatcaggtgcccgatcacctgaaaatcaccttccgcgtggtggatgacaaaaac
aagaagctaaaagaagggcgctcgctacaagatctgaaagatgcgctgaaaggcaaagtg
caggaaacgctgtctgcggtggcggatgacggtatcgagcagagcgggctgcatatctgg
agttttggtcagctgccggaaagctacgaacagaagcgtggcaactacaaagtgaaggcg
tggccagcgctagtggatgaacgcgacagtgtggcgatcaaactgtttgataatccgcta
gagcaaaaacaggcaatgtggaacggtcttcgccgtctactgctgctgaatattccctcg
ccgatcaagtatttacatgagaagttaccaaacaaagccaagctggggctgtactttaac
ccgtatggcaaagtgctggagctgatcgacgactgtatctcctgcggtgtggataaattg
atcgacgccaatggtggcccggtctggacggaagaaggctttgctgcgctgcatgaaaaa
gtgcgtgccgaactgaacgacacggtggtggatattgcgaagcaggtcgagcaaatcctt
acggcagtgttcaatatcaacaaacgtctgaaagggcgggtggatatgaccatggcgctg
gggctttctgacattaaagcgcagatgggcgggttggtatatcgcggttttgtcactggt
aacggcttcaaacggctgggcgacacgctgcgatatttgcaggcgattgaaaaacgactg
gaaaaactggcggttgatccacatcgcgaccgtgctcagatgctgaaagtcgaaaacgtc
cagcaggcgtggcagcaatggatcaacaaactgccgcctgcacgtcgtgaggatgaagac
gtgaaagagatccgttggatgatagaagagctgcgcgttagttacttcgctcaacaactt
ggtacgccttatccgatttcagataagcgtattttgcaggcgatggagcagattagcggt
taa
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integrated database retrieval system
