Intestinibaculum porci: SG0102_00270
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Entry
SG0102_00270 CDS
T05736
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ebm
Intestinibaculum porci
Pathway
ebm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ebm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SG0102_00270 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ebm03019
]
SG0102_00270 (rnr)
03016 Transfer RNA biogenesis [BR:
ebm03016
]
SG0102_00270 (rnr)
Enzymes [BR:
ebm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
SG0102_00270 (rnr)
Messenger RNA biogenesis [BR:
ebm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SG0102_00270 (rnr)
Transfer RNA biogenesis [BR:
ebm03016
]
Prokaryotic type
tRNA degradation factors
SG0102_00270 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
OB_RNB
S1_RRP5
OB_RNR_1st
Motif
Other DBs
NCBI-ProteinID:
BBH25093
UniProt:
A0A3G9JJB9
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All DBs
Position
29320..31557
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AA seq
745 aa
AA seq
DB search
MQEEVLKLLADRKYQARSINEIAHALHQDENTDDFVNFVKLMNAMEDESLIIRDRNNRYY
LLDQLNFFKGVLSVNRKGFGFVKIDEKREFYINEKNIKDAFNGDTVLIQKLNKQKGDKEE
ALIVRVLERGSNKYVGEVKSGRKDLYVETDDPRFHKKIFVDAAHAHGAMPGHKVVVEIKT
YKPQLKGDIIEILGHKNDPGVDILSIIKAHDITIDFPDEVYEYIEKNIPDEIDPNDLKNR
VDLRDTFIVTIDGDDAKDLDDAISLRKLDNGHYELGVHIADVSYYVRENTPLDKEAVKRG
TSIYLVDRVIPMLPHKLSNGICSLNEGVDRYTISCIMELDEKGKVVDHKILPTVIHSNHR
MTYNNVNRIINGEDLPEYRDAKDLFFLMKEVAGILHEKRKKRGAIDFDTNEAKILVDENG
HVEDITLRQRGESEHFIEEFMLCANETVAEHFKWMDLPFIYRVHEYPKEKKLRQFISIAR
PLGYTIHGSLDHVTPHELARVVDESIGRPEHTVIATLLLRCMQKARYDAQCLGHFGLADE
FYTHFTSPIRRYPDLLVHRLIRTFLFDKKMDRIKHFDELIPYLAEQSSMRERVAVDTEYD
VDDMKKAEYMEEHIGETFEGVISSVTSFGFFVELPNTIEGLVHMNNMADDYYNFIEDQMM
LVGERTAKQYRLGDKVKVTVLDVDKMEKRVDFSVISTTKIKRKKLTTQEDHRSHFHKKKI
YGNEKKYGHNSRERKNKKYNKKRRR
NT seq
2238 nt
NT seq
+upstream
nt +downstream
nt
atgcaggaagaagtattaaaactattagctgatcggaagtatcaggcccgttccatcaac
gaaatcgcccatgctttacatcaggatgaaaacaccgatgattttgtgaacttcgtcaaa
ctgatgaatgccatggaagatgagagtctgatcatcagagatcgcaataaccgatattat
ttattagatcagctgaacttctttaaaggcgtattaagtgtcaaccgtaaaggtttcggt
tttgtgaaaattgatgagaaacgtgaattctatatcaatgaaaagaatattaaagatgcg
tttaatggtgatacagttttaattcagaaactgaataaacaaaaaggtgataaagaagaa
gccttaatcgtcagagtcttagaaagaggctctaataaatatgtcggagaagtgaaatcc
ggccgtaaagatttatatgtcgaaaccgatgatccacgattccataagaagatcttcgtg
gatgccgcccatgcccatggggcgatgccaggacataaagtcgttgtggaaatcaaaaca
tacaagcctcagttaaaaggggatatcattgaaatcttaggccataaaaatgatcctgga
gtcgatattctctcaattattaaagcccatgacattaccattgatttccctgatgaagtc
tatgaatatatcgaaaagaatattcctgatgaaatcgatccaaatgatttaaagaatcga
gtggatttaagagatacctttattgtgacgatcgatggtgatgatgccaaagacttagat
gatgccatctcattaagaaagttagataatgggcattatgaattaggtgttcatatcgct
gatgtctcttattatgtcagagaaaataccccgttagataaagaagcagtcaaaagaggg
acttcgatctatttagtcgatcgcgtcattccaatgctgccacataaattatccaatggg
atctgttccttaaatgaaggcgtggatcgttatactatttcatgtattatggaattagat
gaaaagggaaaagtagtggatcataagatcttaccaaccgttattcattctaatcaccgc
atgacatacaataatgtcaatcgtattattaatggtgaagatttaccagaatatcgtgat
gctaaagacttattcttcttaatgaaagaagttgccggcatcttacatgaaaaacgtaag
aaacgcggggctattgactttgataccaatgaagccaagatcttagttgatgaaaatggt
catgttgaagacatcactttaagacagcgcggtgaatcagaacacttcattgaagagttc
atgctttgtgcgaacgaaaccgttgccgaacattttaaatggatggacttaccgtttatt
taccgtgttcatgaatatccaaaggaaaagaaattaagacagtttatttctattgccaga
ccattaggttataccattcatggctccttagatcatgttacaccacatgaattagcacgc
gtcgttgatgaatcgattggtcgtccagaacatactgtcatcgcaacattattgttaaga
tgtatgcagaaagcacgttatgatgctcagtgtttaggacactttggtttagcagatgaa
ttctatacccactttacctcaccaattcgtcgttacccggatttattagtccatcgtttg
attagaaccttcctttttgataaaaaaatggatcgcatcaaacactttgatgaattaatt
ccatacttagcggagcagtcatcaatgcgtgaacgtgtagcggtcgatacggaatatgat
gttgatgatatgaagaaagcagaatacatggaagaacatattggtgaaacctttgaaggg
gtgatctcttcagttaccagctttggcttctttgtagaactgcctaataccattgaagga
cttgttcatatgaacaacatggccgatgattactataacttcattgaagatcagatgatg
ttagttggtgaaagaaccgctaaacagtatcgtttaggtgataaggttaaagttacggtt
ttagatgttgataagatggaaaaacgtgttgatttcagtgtcatttctacaacgaaaatc
aaacgtaaaaaattaaccacacaggaagatcatagaagccatttccataagaaaaaaata
tatggaaatgagaaaaaatatggtcataacagtagagaaagaaaaaataagaagtataat
aagaaaagaaggagataa
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