Intestinibaculum porci: SG0102_07130
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Entry
SG0102_07130 CDS
T05736
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ebm
Intestinibaculum porci
Pathway
ebm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ebm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SG0102_07130 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ebm03021
]
SG0102_07130 (rpoC)
03400 DNA repair and recombination proteins [BR:
ebm03400
]
SG0102_07130 (rpoC)
Enzymes [BR:
ebm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SG0102_07130 (rpoC)
Transcription machinery [BR:
ebm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SG0102_07130 (rpoC)
DNA repair and recombination proteins [BR:
ebm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SG0102_07130 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
BBH25779
UniProt:
A0A3G9JRS7
LinkDB
All DBs
Position
736784..740476
Genome browser
AA seq
1230 aa
AA seq
DB search
MASNTNFSAIRIGLASPDKIREWSHGEVKKPETINYRSQKPEKDGLFCERIFGPMKDWEC
ACGKYKKIRYKGVVCDRCGVEVTKSSVRRERMGHIELATPVAHIWYLKGIPSRMGLILDM
PAKQLEEIIYFVSYVVTDKGTTPLEYKQVLSERDYRNCYEKFGDQFEAKIGAEAIKVLLQ
KVDLDEEFEKVNKELREAQGQKRQKLLKRLDAIEAFRSSHNQPEWMILDVLPVIPPDLRP
MLQLDGGRFATSDLNDLYRRVITRNNRLKKLLELGTPSIIVQNEKRMLQEAVDALIDNGR
RSKPITGAGGRPLKSLSHTLKGKQGRFRQNLLGKRVDYSGRSVIAVGPTLKMYQCGIPRE
MALNLFKPFVISGLVRDQIAQNIKAAERMIDKMDDAIWPVVEEVINTHPVLLNRAPTLHR
LGIQAFEPILVEGRAIRLHPLMCPAFNADFDGDQMAVHVPLGEEAIQEARQLMRGDHNIL
GPKDGKPIVTPSQDMVLGNYYLTTEVAGKIGEGTVFADVNEVLMAYDAKTVHLHTRCAIR
GASLHNKTFTEEQNNAYLITSVGKIIFNQIFDGEFPFMNEDSAENLKHTPDKFFVPFGTN
IKEHIAAQPIIHPFTKKTLEKIIGEAFKTQHSEDISVMLDKMKNQGYHYSTVAGLTVSVA
DIQIPQKKYVLFDEADDQLEVIKKLYAKGKLTESERYNAVIKLWTDIKDRVQDVVQEEFV
SDVTNPIFIMSDSGARGNISNFTQLVGMRGLMSNPKGETIELPIKSALREGLTASEFFIS
THGARKGSTDTALKTADSGYLTRRLVDVAQEVVVTEEDCGTDRGFKVSALYNADGSEIVG
LSNRLIGRTSLKDIVNPQTGEVIVAANQLMNENDAKAVVDAGIEEVEIRSIFGCRAKDGV
CCKCYGRNLATGEPVEVGETVGVMAAQSIGEPGTQLTMRTFHQGGVAGDADITQGLPRVQ
ELFEARNPKAKSIISEISGEVTNIIDNAGRAEVVVSNDLETKSYLAPYGAKLRVAVGDQV
EVGGKITEGSIDPKELLSVASMEAVENYILKEVQKVYSLQGIDISDKHIEIIVRQMMKRM
RIIDGGDTGVLPGKHVNVQEFTNLNRQALKEGKRPAVGRPILLGITKASLDTDSWLASAS
FQETTRILTDAAIKGKVDHLKGLKENVIIGHLLPAGTGLRGPLKSPETIAQEKEEAERLA
ELKKSEDEAPYFDPDDATFNEPEEFIPHNK
NT seq
3693 nt
NT seq
+upstream
nt +downstream
nt
atggcatcaaatactaatttttccgcaatccgtattggtttagcctctcctgataaaatt
cgtgaatggtctcatggcgaagtaaaaaagccagaaaccattaactaccgttcacagaaa
cccgaaaaagacgggttattctgtgaacgcatcttcggtccgatgaaggactgggaatgt
gcctgcggtaaatataagaaaatcagatataaaggtgtggtctgtgatcgctgtggtgtt
gaagtcactaagtcttctgtccgccgtgaaagaatgggtcatatcgaattagcaacgcca
gttgcgcatatctggtatttaaaaggtattccatcacgcatgggcttaatcttagacatg
ccagcgaaacagttagaggaaattatctacttcgtttcttatgtcgttactgataaagga
acgacaccactggaatacaaacaggtcttatcagaaagagattatcgtaactgctatgaa
aaattcggtgatcagttcgaagcaaaaatcggggctgaagcgatcaaagtcttattacag
aaagtagacttagatgaagaatttgaaaaggttaacaaagaattaagagaagctcagggg
cagaaacgtcagaaattattaaaacgtttagatgctattgaagcattccgttcttctcat
aaccagccagaatggatgatcttagacgttttaccagttattccacctgatttacgtcca
atgttacagctggatggcggtcgtttcgccacttctgacttaaacgatttatatcgtcgt
gttatcactcgtaataaccgtttaaagaaactgttagagttaggaacaccttccattatc
gtccagaacgaaaaacgtatgttacaggaagctgttgatgccttaattgataacggtcgt
cgttctaaaccaattactggtgctggcggacgtcctttaaaatcactgtctcatacttta
aaagggaaacagggtcgtttcagacagaacttattagggaaacgtgttgactactcaggt
cgttccgtaatcgcagtgggaccaactttaaagatgtatcagtgcgggatcccaagagaa
atggctttaaacttatttaaaccattcgttatttcaggattagttcgtgatcagattgcg
cagaatatcaaagctgctgaacgtatgatcgataagatggatgatgctatctggccagtt
gtggaagaagttatcaacacgcatccagtcttattaaaccgtgcccctaccttacataga
ttagggatccaggctttcgaaccaatcttagttgaagggcgtgccattcgtctgcaccca
ttaatgtgtccagcgttcaacgccgacttcgatggtgaccagatggccgtccatgtccct
cttggtgaagaagctattcaggaagcacgtcagttaatgcgtggtgaccacaacatctta
ggtcctaaggatggaaaaccaatcgttacaccatcacaggatatggtgcttggtaactac
tatttaacaactgaagtagcgggtaagatcggtgaagggacagtcttcgctgatgtgaac
gaagtcttaatggcttatgatgcaaaaactgttcacttacatacacgttgtgccatccgt
ggtgcttcattacataataaaacattcacagaagaacagaacaatgcttatctgattact
tctgttggtaagattatcttcaaccagatcttcgatggggaattcccattcatgaatgaa
gactcagcggaaaacttaaaacatacgccagataagttctttgtcccatttggtacaaac
attaaagaacatatcgcagcgcagccaatcattcatccatttacgaagaaaaccttagaa
aagatcatcggtgaagccttcaaaacgcagcattctgaagatatcagtgtcatgcttgat
aagatgaaaaaccagggttaccattactcaacagtggctggtttaaccgtatccgttgcc
gatatccagatccctcagaagaaatacgtcttattcgatgaagctgatgaccagctggaa
gttattaagaagttatacgccaaagggaaattaacagaatctgaacgttataatgccgtc
atcaaattatggactgacattaaagaccgtgttcaggatgtcgtacaggaagagttcgtc
tctgacgttacgaacccaatcttcatcatgtcagactctggtgcccgtggtaacatctcg
aacttcactcagctcgtaggtatgcgaggcttaatgtctaaccctaagggtgaaacgatc
gaattaccaatcaagtcagccctccgtgaagggttaacggcatccgaattcttcatttcg
actcatggtgcccgtaaaggttctaccgatacggccttaaagactgccgattcaggttac
ttaacgcgtcgtcttgtcgatgttgcgcaggaagttgttgtaacagaagaagactgtgga
acagaccgcggcttcaaagttagtgctttatacaatgccgatggttcagaaatcgttggt
ttatctaaccgtttaatcggtcgtacatcattaaaagatatcgttaatccacagactggt
gaagtcatcgtggctgcaaatcagttaatgaatgaaaatgatgcaaaagccgttgtcgat
gccggcattgaagaagtagaaattcgttctatcttcggctgtcgtgctaaagacggtgtc
tgctgcaaatgttacggtcgtaacttagcaacgggtgaaccagtagaagtcggtgaaact
gtcggtgttatggccgctcagtcaatcggtgaacctggtactcagttaacaatgcgtacc
ttccatcagggcggggttgccggtgatgccgatatcactcaggggttacctcgtgtacag
gaattatttgaagccagaaatccaaaggcaaaatctatcatctctgaaatcagcggtgaa
gttactaacattatcgataatgccggccgtgccgaagtcgttgtctctaacgatttagaa
acaaagagctacttagcaccatatggtgcaaaactccgcgttgcggtaggcgatcaggtt
gaagttggtggtaagattactgaaggttctatcgatcctaaggaattattatccgtagct
tcaatggaagctgttgaaaactacatcctgaaggaagttcagaaagtttactcacttcag
ggtatcgatatttccgataaacatatcgaaattatcgtccgtcagatgatgaaacgtatg
cgtatcatcgatggcggtgacactggcgtcttaccaggtaaacatgtcaatgtccaggaa
tttacaaacctgaacagacaggctttaaaagaaggcaaacgtccagcagttggtcgtcca
atcttacttggtatcacgaaggcttccttagatactgactcttggttagcaagtgcttcc
ttccaggaaacaacacgtatcttaacggatgcagccatcaagggtaaagttgatcatctg
aagggcttaaaggaaaatgtcattattggtcacttattaccagctggtactggtttaaga
ggtccattaaaatctcctgaaaccatcgctcaggaaaaagaagaagcagaacgcttagca
gaactcaagaagagtgaagatgaagcaccatacttcgatcctgatgatgcaaccttcaat
gaaccagaggaattcatccctcataataaataa
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