Intestinibaculum porci: SG0102_12090
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Entry
SG0102_12090 CDS
T05736
Name
(GenBank) hypothetical protein
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ebm
Intestinibaculum porci
Pathway
ebm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ebm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SG0102_12090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ebm03019
]
SG0102_12090
03400 DNA repair and recombination proteins [BR:
ebm03400
]
SG0102_12090
Enzymes [BR:
ebm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SG0102_12090
Messenger RNA biogenesis [BR:
ebm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SG0102_12090
DNA repair and recombination proteins [BR:
ebm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SG0102_12090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
Motif
Other DBs
NCBI-ProteinID:
BBH26275
UniProt:
A0A3G9JCY8
LinkDB
All DBs
Position
1297724..1300231
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AA seq
835 aa
AA seq
DB search
MRMRNRELEEQVSKYFKGEITSQDILSYIQNLNFKDSHQHFLASTVKRLILIAEKRKQSN
LYDHDFLIALRDYLLVFNNPRLDGDIITGFDIEDYDIIVQEGQCRCYLDQIPNGITPKFI
KDTYALTSKKSEPSHKASLITDNKIYDLTGYKYFKSIRQKIAVYGALKTPNGYTTLISLP
TGGGKSLITQSIAYQGRGLTIVIVPTVSLAIDQEKSAKKVIKSENADEEIFYYASGFSKD
KQDLIISSIKNHTAKLLFISPEALQNNEIFKNIVKTANDLKYLKNIVIDEAHIVVDWGRN
FRPEFQSLESWRNALMFENEEIRTFLLSATFVERDTKILKNLFSNRDKWIEIRCDALRQE
PRFNVIKKNTEGQKKDCIVELVKKLPHPMIIYTDQPAHAEQYKKLLEAHQINNIKTFTGN
TKNDERKRLINEWKNDEFEIMIATSAFGVGVDKSDIRTVIHTYVPQNPNAYYQELGRGGR
DGLPCLSVMCITPSRDLADAKNKMLRSILSEEKIFQRWDSMFNSPKSKRIGNKVYIDTSI
VPNYVESDHNDDFSNEGHVRWNVYVLFLLRRCNLISINNVIKDGKKYIFTIEINDDVLYG
RNQVEIIDKMHHAYNEEAQYYNDSFAEIQDHIENAGKECWSEMFYSTYDFVDEYCAGCDE
HKEIIDGTSNEILKKPVTKPCMLFGANRLKWLSENREAIIITSEMNYAQIIKKFADHIFV
TVVIPNDYCNQELESMIKDQTRKNIFILQFDTFYKLIKNGSYFFVSGLVIVVYNSQKEDQ
MYNFSLVKNNLYNMENIRIIHLTNEDMNVKNAKKMSDYVDGALIDENSLGDDIYV
NT seq
2508 nt
NT seq
+upstream
nt +downstream
nt
gtgaggatgagaaatagagagttagaagaacaggtatcaaaatattttaaaggggaaata
acctctcaagatattttgtcttatattcaaaatttaaattttaaagatagccatcagcat
tttcttgcatcgactgtgaaaagactgatattaattgctgaaaaaaggaagcaatccaat
ttatatgatcatgattttcttattgcattaagggattatttactcgtttttaataatccc
agactagatggagatattattacaggattcgatattgaagactatgatattattgttcaa
gaagggcaatgcagatgttatttagatcaaattccaaatggaattacgcctaaatttatt
aaagatacgtatgctttgacaagtaaaaaaagtgaaccttctcataaagcaagcttgatc
acagataataaaatttatgatttgactgggtataagtattttaagtcaatacgtcagaaa
atagctgtatatggtgcattgaaaacaccaaatggttatacaacactcatttcactgcct
acgggtggaggaaagagtttaataacacaaagtattgcttatcaaggtcgtggcttaacg
attgttatagtgcctacagtttccttagcaattgatcaggagaaaagtgcaaaaaaggtt
ataaagagcgaaaatgctgatgaggaaattttttattatgcaagtggcttttccaaagat
aaacaagatttaattatttcttcaattaaaaaccatacagcaaaacttttgtttatttct
cctgaagcattgcagaataatgaaatatttaagaatattgtaaagacagcaaatgatctc
aaatacttaaaaaatattgtaattgatgaagcacatattgtggtagattggggaagaaat
tttcgacctgaatttcaatcattagagtcctggagaaacgctttgatgtttgaaaatgaa
gagattcgaacatttcttctttcagccacatttgtagagcgtgatactaaaattttgaaa
aatctattctcaaatcgagataaatggattgaaataagatgtgatgcattaaggcaagaa
ccaagatttaatgttatcaaaaaaaatactgaaggtcaaaagaaagattgcattgttgag
cttgtaaagaaattaccgcatccaatgattatttatactgatcagcctgctcatgctgag
caatataaaaagctgctagaggcacaccaaataaataatatcaaaacatttactggtaat
acaaaaaatgatgagagaaagagactcattaatgagtggaaaaatgacgagttcgaaatc
atgatcgctacttcagcgtttggtgttggagttgataaaagtgatattagaactgttatt
catacatatgttccacaaaaccctaatgcttattatcaggagttaggacgaggaggaaga
gatggccttccttgtcttagtgttatgtgtattacccctagcagagatttggcggatgct
aaaaataaaatgttgagaagtattttaagcgaagaaaaaattttccaaagatgggatagt
atgtttaattccccaaaatcaaaaagaataggaaataaagtttatatagatacgtctatt
gttccaaattatgtggaatcagatcataatgatgatttttcaaatgaaggacatgtgaga
tggaatgtttacgttttatttttgttgaggcgatgtaatttaatttcaatcaacaatgtt
attaaggatggtaaaaaatatatatttaccatagaaatcaacgatgatgttttatatggt
cgcaatcaggtcgaaataattgataaaatgcatcacgcatataacgaagaagcgcaatac
tataatgattcattcgctgaaatacaggatcatattgaaaatgcaggaaaagaatgctgg
tcagaaatgttctatagtacttacgattttgttgatgagtattgtgcaggctgtgatgag
cataaagaaattattgatggaacaagtaatgaaattttaaagaagcctgtcacaaaacca
tgtatgttatttggtgctaatagattaaaatggttatctgaaaatagagaagcgataata
ataacatctgaaatgaattatgcgcaaattattaaaaagttcgcagaccatatttttgta
actgttgtaatacctaatgattattgtaatcaagagttagaaagtatgattaaagatcaa
acgagaaaaaatatctttatcttacaatttgatacattttataaactaattaaaaatggc
tcctatttttttgttagtggtttagtaattgttgtatataattcgcaaaaagaagatcag
atgtataatttttctttagtaaagaataatttatataatatggaaaatattagaattata
catttaacaaatgaagatatgaatgttaagaatgcaaaaaaaatgagtgattatgttgat
ggtgcgttgattgatgagaattctttaggagatgatatttatgtttaa
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