Intestinibaculum porci: SG0102_18470
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Entry
SG0102_18470 CDS
T05736
Symbol
cshA
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ebm
Intestinibaculum porci
Pathway
ebm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ebm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SG0102_18470 (cshA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ebm03019
]
SG0102_18470 (cshA)
03009 Ribosome biogenesis [BR:
ebm03009
]
SG0102_18470 (cshA)
Enzymes [BR:
ebm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SG0102_18470 (cshA)
Messenger RNA biogenesis [BR:
ebm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SG0102_18470 (cshA)
Ribosome biogenesis [BR:
ebm03009
]
Prokaryotic type
rRNA helicases
SG0102_18470 (cshA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_19
AAA_30
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BBH26913
UniProt:
A0A3G9JPH8
LinkDB
All DBs
Position
complement(1954563..1956131)
Genome browser
AA seq
522 aa
AA seq
DB search
MSKIKFNELPLSDDVLRAIDEMGFTTPSKIQEKAIPEIIKGRDLIGQAQTGTGKTLAFGS
ALLSELHHSDHIQAIVLSPTRELASQIYEQFKRIGKYTDLRFTCVYGGSEIEKQIRTIKR
GVDVLIGTPGRVMDLMRRKVVKLDHLVYFVLDEADEMLNMGFVDDIETILSTVPETRQTV
LFSATMPDGIKKIASNYMKHDYLHIRIKEKQQTATTVKQFFYVAKPKQKFEVLCRILDSH
DIESAIIFCKTKRSVDEISSELQAHNYNVEAMHGDISQTTRMHTLRRFKDHKIKYLIATD
VAARGIDVDHVSHVINYELPQEDELYVHRIGRTGRAGNTGEAYTIVSPRELGILRKIERK
TNSHFVELDIPSIDDIFNEKIKELLFDIQDVLDRGAQHDFYNVVRDMPKSMRDDVLAALL
KMNYDSRIGYDYQDDYAMVKESVDHDRLFINRGKVDKVNKSRLLAFLCDTAHIQKSDIGE
ITIKRKFSFVNVKKDVTDKILSTCNHKKLNSRKINIEIAQEM
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaaattaaatttaatgaattacctttatcggatgatgtgttaagagccatcgat
gaaatgggctttacaacaccaagtaagattcaggagaaagcgatccccgaaattattaag
ggacgcgacctgatcggtcaggcgcagacgggcacgggcaagactttagcctttgggtca
gcgcttttgtcagagttacatcatagtgatcatattcaggcgattgtattatcgccaacc
cgcgaattagccagccagatttatgaacagtttaaacggattggaaaatatactgattta
cgttttacctgcgtttatggcggcagtgaaatcgaaaaacagattcgcaccattaaaaga
ggcgtcgatgtgttaattgggacaccgggacgtgtaatggatttaatgcgtcggaaagtg
gtcaaattagatcatttggtttactttgttttagatgaagcagatgaaatgttaaacatg
ggatttgtggatgacattgaaacgattttatcaacggttccagaaacgcgtcagactgtg
ttattttcggcaacgatgcctgatggcatcaaaaagatcgcttcaaactatatgaagcat
gattatttacatatccgcattaaagaaaaacagcagaccgcgacgacggtcaagcagttc
ttctatgtggcgaagccaaaacagaagtttgaagtgttatgtcgtattttagattcccat
gacattgaatcggcgattatcttttgtaagaccaaacgcagcgttgatgaaatttccagc
gaactgcaggcgcataattacaatgtcgaagcgatgcatggcgatatttctcagaccacg
cgtatgcataccttaagacgttttaaagatcataagatcaaatatttaatcgccacggac
gttgcagcccgcgggattgatgtcgatcatgtcagtcatgtcatcaactatgaattacct
caggaagatgaattatatgtccatcgtattggccgtaccggccgtgccggcaatactggc
gaagcttatacgatcgtttctccaagagaacttggcatcttaagaaagattgaacgtaag
accaattcccactttgtggaattagatattccttccattgatgatatctttaatgaaaag
attaaagaattgttatttgatattcaggatgtcttagatcgcggagcgcagcatgatttc
tataatgttgtacgcgatatgccaaaatcaatgcgggatgatgtcttagccgctttatta
aagatgaattatgatagccgtatcggttatgactaccaggatgattatgcgatggtcaag
gaaagcgttgatcatgatcgtctctttatcaatcgtggtaaggtagataaggtcaacaag
tcacgtttgttagcgttcttatgtgataccgcacatattcaaaaaagtgatattggggaa
attacgatcaagagaaaattcagtttcgttaatgtgaagaaggatgtcacggataaaatc
ctctcaacctgcaatcacaagaagctcaattcaagaaaaattaacattgaaattgcccag
gagatgtag
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