Intestinibaculum porci: SG0102_19470
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Entry
SG0102_19470 CDS
T05736
Name
(GenBank) hypothetical protein
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
ebm
Intestinibaculum porci
Pathway
ebm03410
Base excision repair
ebm03430
Mismatch repair
ebm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ebm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SG0102_19470
03430 Mismatch repair
SG0102_19470
03440 Homologous recombination
SG0102_19470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ebm03400
]
SG0102_19470
DNA repair and recombination proteins [BR:
ebm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
SG0102_19470
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
SG0102_19470
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SG0102_19470
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
BBH27013
UniProt:
A0A3G9JPT7
LinkDB
All DBs
Position
complement(2067260..2068903)
Genome browser
AA seq
547 aa
AA seq
DB search
MKYKIDQLSKTSQIIKDYHVNPLLAKVIEEKGLSLEAYQQMINPRLIYHDFSLFTEGEMA
LDRIWEAIEKKEKIVIYGDYDCDGILATSILVQAFHELNIHVGFHIPNRFEDGYGLNVHR
VEQMAEKGYNLIITVDNGIKAFEAVEKANELGVDVIITDHHTFEGDDYPDACAIVHPKLG
DSYPMKEICGGFIAYKLAAALLGHHDPYLYSLAAITTISDMMPLRDENRSVVKRSLAFMA
EKHYPQLDLLLGNQRYSTTSIGFTIAPKINAFGRLPEIVNPNNLVKFFQKDCPMRFMEAV
SENAKKINTKRQSLTNAQYEEAMQEEHEHCLYYASENVHEGIIGLIAGKYTRTYEQPALV
MHYDEESQTYKGSARGVNGFNIYEFFDAHKDLLIQFGGHAMAGGFSVAQSHFEDLHQALL
KDIDGRDFNAEKVVIPVSFEELTIDNVSSLEALEPYGQTNEQPLFILKDVTFDGLRQLSE
GKHLRFDKTLEAGRFAALYFGKGDRYEDYLNQELTMVGTLSINEYHGFKSVNMIIEEIVN
DDDLEFA
NT seq
1644 nt
NT seq
+upstream
nt +downstream
nt
atgaaatataaaatagatcagctgtctaaaaccagccagattatcaaggattatcatgtc
aatcccttattggcgaaagtcattgaggaaaaaggattaagcttagaagcgtatcagcag
atgatcaatccgcgtctgatttatcatgacttctctttatttacggaaggagaaatggcc
ttagatcgtatctgggaggccattgaaaaaaaggaaaagattgtcatctatggggattat
gactgtgatggcattttagctacatccattttagtgcaggcttttcatgaattaaatatc
catgtcggtttccatattcccaatcgttttgaagatggctatggtctcaatgtccatcgc
gtggagcagatggctgagaaaggctacaatctcattattactgtcgataatggcattaag
gcgtttgaagccgttgaaaaagccaatgaactaggagtggatgtcattattaccgatcac
catacctttgaaggcgatgactatcctgatgcctgtgccattgtccatccgaaattaggg
gatagttatccgatgaaagagatctgtggcggttttattgcctataaattagcggcggct
ttattagggcatcatgatccctatttatattctttagcggcgattacgacgatttctgat
atgatgcctttgcgtgatgaaaaccgcagtgttgtcaaacgctctctcgctttcatggct
gagaaacattatcctcagttagatcttttactagggaatcagcgctattcaacaacctcg
attggttttaccattgcccccaaaatcaacgcctttgggcgcttgccggaaattgtcaat
ccgaataatttggtgaaattctttcagaaagactgtcccatgcgctttatggaagcggtc
agtgaaaatgcgaaaaagattaatacaaaaagacagtcgctcaccaatgcgcagtatgaa
gaagcgatgcaggaagagcacgaacattgtctctattatgcctcagaaaatgttcatgaa
ggaattatcggtttgattgccggtaaatatacgagaacctacgaacagccggcattagtc
atgcattatgatgaagagagtcagacctataaaggatcggcccgcggggtcaatggcttc
aatatttatgaattctttgatgcccataaagatttactcattcagtttggcggtcatgcc
atggcgggcggctttagcgtggcgcaaagtcatttcgaagacttgcatcaggctttactc
aaagatatcgatggtcgtgatttcaacgcggaaaaagttgtcattccggtttcttttgaa
gaacttaccattgataatgtcagcagtttagaagcgttagaaccttatggacaaacgaat
gagcagccgttatttattttaaaggatgtcacctttgatggtttgcgtcagttaagtgaa
ggcaagcatctgcgttttgataaaacgctcgaagcaggccgttttgcggctctttatttc
ggcaaaggggaccgttatgaagactatctcaatcaagagctcacgatggtcggtacttta
tcaatcaatgagtatcatggttttaaaagcgtcaatatgattatcgaagagatcgttaat
gatgatgatttagaatttgcttaa
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