Escherichia coli B REL606: ECB_01025
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Entry
ECB_01025 CDS
T00944
Symbol
ycdR
Name
(GenBank) predicted enzyme associated with biofilm formation
KO
K11931
poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase [EC:3.5.1.-]
Organism
ebr
Escherichia coli B REL606
Pathway
ebr02026
Biofilm formation - Escherichia coli
Brite
KEGG Orthology (KO) [BR:
ebr00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02026 Biofilm formation - Escherichia coli
ECB_01025 (ycdR)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GHL13
Polysacc_deac_1
GHL10
Motif
Other DBs
NCBI-ProteinID:
ACT38707
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All DBs
Position
complement(1104124..1106142)
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AA seq
672 aa
AA seq
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MLRNGNKYLLMLVSIIMLTACISQSRTSFIPPQDRESLLAEQPWPHNGFVAISWHNVEDE
AADQRFMSVRTSALREQFAWLRENGYQPVSIAQIREAHRGGKPLPEKAVVLTFDDGYQSF
YTRVFPILQAFQWPAVWAPVGSWVDTPADKQVKFGDELVDREYFATWQQVREVARSRLVE
LASHTWNSHYGIQANATGSLLPVYVNRAYFTDHARYETAAEYRERIRLDAVKMTEYLRTK
VEVNPHVFVWPYGEANGIAIEELKKLGYDMFFTLESGLANASQLDSIPRVLIANNPSLKE
FAQQIITVQEKSPQRIMHIDLDYVYDENLQQMDRNIDVLIQRVKDMQISTVYLQAFADPD
GDGLVKEVWFPNRLLPMKADIFSRVAWQLRTRSGVNIYAWMPVLSWDLDPTLTRVKYLPT
GEKKAQIHPEQYHRLSPFDDRVRAQVGMLYEDLAGHAAFDGILFHDDALLSDYEDASAPA
ITAYQQAGFSGSLSEIRQNPEQFKQWARFKSRALTDFTLELSARVKAIRGPHIKTARNIF
ALPVIQPESEAWFAQNYADFLKSYDWTAIMAMPYLEGVAEKSADQWLIQLTNQIKNIPQA
KDKSILELQAQNWQKNGQHQAISSQQLAHWMSLLQLNGVKNYGYYPDNFLHNQPEIDLIR
PEFSTAWYPKND
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atgttacgtaatggaaataaatatctcctgatgctggtgagtataattatgctcaccgcg
tgcattagccagtcaagaacatcatttataccgccacaggatcgcgaatctttactcgcc
gagcaaccgtggccgcataatggttttgtagcgatttcatggcataacgttgaagacgaa
gctgccgaccagcgttttatgtcagtgcggacatcagcactgcgtgaacaatttgcctgg
ctgcgcgagaacggttatcaaccggtcagtattgctcaaattcgtgaagcacatcgagga
ggaaaaccgctaccggaaaaagctgtagtgctgacttttgatgacggctaccagagtttt
tatacccgcgtcttcccaattcttcaggccttccagtggcctgctgtatgggcccccgtc
ggcagttgggtcgatacgccagcggataaacaagtaaaatttggcgatgagttggtcgat
cgagaatattttgccacgtggcaacaagtgcgagaagttgcgcgttcccggctcgttgag
ctcgcttctcatacatggaattctcactacggtattcaggctaatgccaccggcagctta
ttgcctgtatatgtaaatcgtgcatattttactgaccacgcacggtatgaaaccgcagca
gaataccgggaaagaattcgtctggatgctgtaaaaatgacggaatacctgcgtacaaag
gttgaggtaaatccacacgtttttgtttggccttatggcgaagcgaatggcatagcgata
gaggaattaaaaaaactcggttatgacatgttcttcacccttgaatcaggtttggcaaat
gcgtcgcaattggattccattccgcgggtattaatcgccaataatccctcattaaaagag
tttgcccagcaaattattaccgtacaggaaaaatcaccacaacggataatgcatatcgat
cttgattacgtttatgacgaaaacctccagcaaatggatcgcaatattgatgtgctaatt
cagcgggtgaaagatatgcaaatatcaaccgtgtatttgcaggcatttgctgatcccgat
ggtgatgggctggtcaaagaggtctggtttccaaatcgtttgctaccaatgaaagcagat
atttttagtcgggttgcctggcaattacgtacccgctcaggtgtaaacatctatgcgtgg
atgccggtattaagctgggatttagatcccacattaacgcgagtaaaatacttaccaaca
ggggagaaaaaagcacaaattcatcctgaacaatatcaccgtctctctcctttcgatgac
agagtcagagcacaagttggcatgttatatgaagatcttgccggacatgctgcttttgat
ggcatattgttccacgatgatgctttgctttcagattatgaagatgccagtgcaccggct
atcacggcttatcagcaagcaggctttagcgggagtctgagcgaaattcgacaaaacccg
gagcaatttaaacagtgggcccgctttaaaagtcgtgcgttaactgacttcactttagaa
cttagtgcgcgcgtaaaagccattcgcggtccacatattaaaactgcacgaaatattttt
gcacttccggtaatacaacctgaaagtgaagcctggtttgcacagaattatgctgatttc
ctaaaaagctatgactggaccgctattatggctatgccttatctggaaggtgtcgcagaa
aaatcggctgaccaatggttaatacaattgaccaatcaaattaaaaacatccctcaggct
aaagacaaatctattttagaattacaggcacaaaactggcagaaaaatggtcagcatcag
gctatttcttcgcaacaactcgctcactggatgagcctattacaactgaatggagtgaaa
aactatggttattatcccgacaattttctgcataaccaacctgaaatagaccttattcgt
cctgagttttcaacagcctggtatccgaaaaatgattaa
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