Ectothiorhodospira sp. BSL-9: ECTOBSL9_1605
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Entry
ECTOBSL9_1605 CDS
T04374
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
ebs
Ectothiorhodospira sp. BSL-9
Pathway
ebs03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ebs00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ECTOBSL9_1605 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ebs03021
]
ECTOBSL9_1605 (rpoB)
03400 DNA repair and recombination proteins [BR:
ebs03400
]
ECTOBSL9_1605 (rpoB)
Enzymes [BR:
ebs01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ECTOBSL9_1605 (rpoB)
Transcription machinery [BR:
ebs03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ECTOBSL9_1605 (rpoB)
DNA repair and recombination proteins [BR:
ebs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ECTOBSL9_1605 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
BSH_YknX
BSH_CzcB
Motif
Other DBs
NCBI-ProteinID:
ANB02255
LinkDB
All DBs
Position
1701706..1705788
Genome browser
AA seq
1360 aa
AA seq
DB search
MAYSYTEKKRIRKDFGKRPQILEVPYLLATQIDSYRQFLQMRDPEAGREEVGLHAAFKSV
FPIVSYSGSVELEYVSYRLGDPVFDVKECQLRGMNYAAPLRVLLRLVIYDKDAPAGSRVV
KDIKEQEVYMGELPLMTENGTFVVNGTERVIVSQLHRSPGVFFDHDKGKTHSSGKLLFNA
RVIPYRGSWLDFEFDPKDSIYVRIDRRRKLPATVLLRALGLETEEILATFFETTDFRVLT
DGFEMALVPARLRGETAAFDIHLGDELLVESGRRITARHVRKMEEAGLNSLQVPADSLIG
KILAHAVVDEDSGEVIANANEELTADLLEKVRRSGMKSFRTLYTNELDHGPYISSTLNID
TTRSQLEAQVEIYRMMRPGEPPTKEAAETLFNNLFFSEDRYDLSPVGRMKFNRRVGREQE
TGPGVLNNDDILDVLKVLIDIRNGNGHVDDIDHLGNRRVRSVGEMAENVFRVGLVRVERA
VKERLSVAESEGLMPQELINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALG
PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAVYARTNRFGFLETPYRRV
VDGKVSEEILYLSAIEEGNYVIAQANVALDEEGRLVDELVSCRYQNEFTMSTPDKIQCVD
ISPKQIVSVAAALIPFLEHDDANRALMGSNMQRQAVPCLRAETPVVGTGIERTVAIDSGS
SIVARRGGVVDSVDAARVVVRVNDDETEAGEPGVDIYNFTKYTRSNQNTCINQSPLVRVG
DTIARGDVLADGSSTDLGELALGQNMLVAFMPWNGYNFEDSILISERVVEEDRFTSIHIE
ELTCVARDTKLGPEEISADIPNVSESLLSKLDESGIVYVGAEVNPGDILVGKVTPKGETQ
LTPEEKLLRAIFGEKASDVKDTSLRVASGIDGTVIDVRVFTRDGVEKDKRALQIEEAALE
SVRKDLKDQLRIYEDDIYDRVEKLLNGKLAAGGPGGLKDGVKVTRSYLGELPREKWFEIR
MRSEEVNEQLELMADALKAQHDAFEKRFKEQKDKLTAGDDLAPGVLKMVKVYVAVKRRMQ
PGDKMAGRHGNKGVVSMIVPTEDMPFTEDGTPMDIVLNPLGVPSRMNVGQVLETHLGWAA
KGLGKKIGHMIEAKAKVDELRQFLDQMYNHDPDNRKEDLSLLSDEEILELAGNLKNGVPM
ATPVFDGAHEHEIKAMLKLADLPESGQATLFDGRTGESFDRPVTVGYMHILKLNHLVDDK
MHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALQAYGAAYTLQEMLTVKSDDVQGRN
KMYKNIVDGDHRMEANIPESFNVLMKEIRSLAINIELEQD
NT seq
4083 nt
NT seq
+upstream
nt +downstream
nt
atggcttatagctacaccgagaaaaagcgaatccgcaaggacttcggcaaacggccccag
atccttgaggtcccctatctgttggccacgcagattgattcctatcggcagttcctccag
atgcgcgaccccgaggccgggcgcgaggaggtaggtctgcacgccgctttcaagtcggtt
tttccgattgtgagctattccggctccgtggagctggagtatgtcagctaccggttgggc
gaccccgtgttcgacgtcaaggaatgtcagctgcggggcatgaattatgctgcgcccctg
cgcgtgctgctgcgcctggtgatctatgacaaggatgccccagcgggctcccgtgtcgtc
aaggacatcaaggagcaggaagtctacatgggtgaattgccgctcatgaccgagaacggc
accttcgtggtgaacggtaccgagcgcgtgatcgtgtctcagttgcaccgttcccccggt
gtgttctttgaccatgacaagggcaagacccacagttccggcaagctcctgttcaatgcc
cgggtgatcccgtatcgcgggtcctggctggacttcgagtttgaccccaaggattccatt
tacgtgcgcatcgaccgccgccgcaagctaccggctacggtgctgctgcgcgcgttgggt
ctggagacggaggagatcctcgccaccttcttcgagaccaccgatttccgcgtgctcacc
gacggcttcgagatggcgctggtgcccgcgcgtctgcgtggcgaaaccgctgcgttcgat
atccatctgggtgatgagctgctggtggagtctggccgtcgcatcactgcccgccatgtg
cgcaagatggaggaggccggcctcaactccctgcaggtgccggccgattccctgattggc
aagatcctcgcccatgcggtggtggatgaggacagcggcgaggtgatcgccaatgccaac
gaggaactcaccgccgatctgctggagaaggtgcgccgctccggcatgaagagcttccgc
acgctttacaccaacgagctggatcacggcccgtacatctccagtacgctgaacatcgat
accacccgctcccagctggaggcgcaggtggaaatctatcgcatgatgcgccccggcgag
ccgcccaccaaggaagcggccgagaccctgttcaataatctgttcttcagcgaggatcgt
tacgacctctcgcccgtgggccgcatgaagttcaaccgccgtgtgggccgggagcaagag
accgggccgggtgtgctgaacaacgatgacatcctggatgtgctcaaggtgctcatcgat
atccgcaacggcaacggccatgtggacgacatcgaccacctgggtaaccgtcgtgtgcgc
agcgtgggtgagatggcggagaacgtcttccgcgtcggcctggtgcgcgtggagcgggcc
gtgaaggagcgcctgagcgtggccgagagcgagggcctgatgccccaggaactcatcaac
gccaagccggtggcggcggcggtgaaggagttcttcggttccagtcagctgtcccagttc
atggaccagaacaacccgctctccgaggtgactcacaagcgccgtatctcggccctgggg
cctggtggcctcacccgtgaacgcgccggcttcgaggtgcgcgacgtgcacccgacccac
tatggtcgggtctgccccatcgaaacgccggaaggtccgaacatcggcctgatcaactcc
ctggccgtgtatgcccgcaccaaccgcttcgggttcctggagaccccgtatcggcgcgtg
gtggacggcaaggtgagtgaagagatcctgtacctgtcggccatcgaagaaggcaactat
gtgatcgcccaggccaacgtggccctggacgaggaaggtcgcctggtggacgagctggtg
tcctgccgttatcagaacgagttcaccatgtcgacgccggacaagatccagtgcgtggac
atctcgcccaagcagatcgtttccgtggccgccgcgctgattccgttcctggagcacgac
gatgccaaccgcgccctcatgggctcgaacatgcagcgccaggccgtgccctgcctgcgt
gccgagaccccggtggtgggtaccggcatcgagcgcacggtggccatcgactccggttcc
tccatcgtcgcccgtcgtggcggtgtggtggactcggtggatgcggcccgtgtggtggtg
cgcgtcaacgatgacgagaccgaggctggcgaaccgggtgtggatatctacaacttcacc
aagtacacccgttccaaccagaacacctgcatcaaccagagtccgctggtgcgcgtgggc
gacaccatcgcccgcggcgacgtgctggccgacggatcctccacggatttgggggagctg
gccctgggtcagaacatgctggtggccttcatgccctggaacggctacaacttcgaggac
tccatcctcatctccgagcgcgtggtggaagaggatcgctttacctccatccacatcgag
gagctgacctgcgtggcccgggacaccaagctggggccggaggagatcagcgccgatatt
cccaacgtgtcggagagcctgctgtccaagctggatgagtcgggcattgtctacgtgggc
gccgaggtgaatccgggcgatatcctggtgggcaaggtcacgcccaagggcgaaacccag
ctcacccccgaggagaagctgctgagagccatctttggtgaaaaggcttcggacgtgaag
gacaccagtctgcgcgtggcgtccggtattgatggcacggtcatcgatgtgcgcgtcttc
acccgtgatggtgtggagaaggacaagcgggccctgcagattgaagaggctgcgctggag
tcggtgcgcaaggacctgaaggaccagttgcgcatctacgaggacgacatctacgatcgc
gtggagaaactgctcaacggcaagctggccgcgggtggtcctggtggtctgaaggatggc
gtcaaggtgacccgttcctacctgggggaactgccccgggagaagtggttcgagatccgc
atgcgcagcgaagaggtgaacgagcagctggagctgatggccgatgccctcaaggcccag
cacgatgccttcgagaagcgcttcaaggagcagaaggacaagctcaccgccggtgacgat
ctggcaccgggtgtgctgaagatggtcaaggtgtatgtggccgtgaagcgtcgcatgcag
ccgggtgacaagatggcgggtcgtcacggtaacaagggtgtggtctccatgatcgtgccc
accgaggacatgcccttcaccgaggatggcacccccatggatatcgtcctcaaccccctg
ggcgtgccgtcgcgcatgaacgtgggtcaggtgctggaaacccacctgggctgggcggcc
aagggtctgggcaagaagatcggtcacatgatcgaggccaaagcgaaggtggatgagctg
cgtcagttcctggatcagatgtacaaccacgatccggacaaccgcaaggaagacctgtcc
ctgctgagcgacgaggagatcctggagctggccggcaacctgaagaacggtgtgcccatg
gccacgccggtgttcgacggtgcccatgagcatgagatcaaggccatgctcaagctggcg
gatctgcccgagtcgggacaggcaacgctgttcgatggccgcactggcgagtcctttgat
cgcccggtgaccgtgggttacatgcacatcctcaagctcaaccacctggtggatgacaag
atgcatgcccgttccacgggcccctatagcctggtgacccagcagccgctgggtggtaag
gcgcagtttggtggccagcgctttggtgagatggaggtctgggcgctgcaggcctatggt
gccgcgtacaccttgcaggaaatgctcactgtgaagtccgacgatgttcagggacgcaac
aagatgtacaagaacattgtcgatggcgatcaccggatggaggcgaacattcctgagtcc
ttcaatgtgctcatgaaggagatccgttcgctggccatcaatatcgaactggagcaggac
tga
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